Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1525 ATGTTGGGTAGAAGAATCTCGGAGGTTGAAACCTTGGCTTTTAAGAGCATTGAATGCAAGCCTTGGTGGGAGATTGGAAATGATCTCTCCCAGTTTTTGGGCCCACTAATATTGAATCAGCTGCTAGAGTCTATGCAAAATGGTGATCCAGCCTGGATTGGATACGTTCTTGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGATTCCGGCTAAGATCAACACTGGTAGCTGCTGTATTTCGCAAATCATTAAGGCTTACCCATGAAGCTCGAAAGCAATTTGCATCTGGAAAAATAACCAACTTGATGACTACTGATGCCAAAGCACTTCAGGCATGGTACAGGAGTTCACCTGATTTCTCTAGTTTGTTTTACCCCTACACTGCTTTGAATCTATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTTCAGAATGTCCGAGATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTTAAATGGATTCATACTGAATAATATTCCAGTTTTTGTAACTGTGATTTCATTTGGAATGTTCACCTTACTTGGAGGGAATTTGACACCCGCAAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTTCAGTTTCCTCTTTTCATGCTTCCTAATATTATAACTCAGAAGAGAGAATACTTTTTACCAAATCCACCGCTTGAGCCAGGATTACCAGCCATCTCAATCAAAAACGGAAACTTCTCCTGGGATTCCAAGGCAGAAAGGCCTACATTGGCAAACATAAACTTGGATATACCTGTTGGTAGCCTAGTTGCAGTTGTTGGAAGTACAGGAGAAGGGAAAACATCACTAGTATCTGCAATGCTTGGAGAACTTCCTGCAGTTGTAGGTTCAACTGTTGTTATGAGAGGGACAGTTGCTTATGTACCCCAAGTCTCTTGGATTTTTAATGCAACTGTGCGGGATAATGTTTTATTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCAATAGATGTGACTGAACTACGACATGACCTTGAGTTACTGCCTGGTGGTGATCTTACCAAAATTGGAGAAAGAGGTGTGAACATCAGTGGTGGTCAAAAGCAAAGAGTATCCATGGCTAGAGCTGTTTACTCCAAATCCGAGTATGCTAGGCACGTGCCTCCAACAATAAAGAAAACGGAGAGAGAAAAAGACAACAGTGCTGCTAAGGTTTTTGATAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACAAATCAACTGCATTTCCTTTCACAGGTGGATRGAATCATTTTGATCCATGAAGGTACTGTGAAAGAGGAGGGAACATTTGAGAAGCTCTCTAACCAGGGGCCATTGTTCCAAAAGCTTATGGAAAATGCTGGAAAGATGGAGGAGTGTGAAGAAGAAAAGGTAGATACTGAAACTGCTGATCCGAAGTCCTCTTCAAAACAAGTGGCCAATGGAGAACTTGATGATACTGCAAAGAGTGGTAGTAAGGCAAAAGAAGGAAAATCTGTCCTTATTAAACTGGAAGAACRGGAAACAGGTGTTGTCAGTATGAAAGTTTTAGCAAGATACAAGACTGCATTAGGAGTTCTTTGGGTGGTTGTAATACTCTTTGGATGCTATTTCTTAACAGAGGTGTTACGAATTTCAAGTAGCACATGGTTGAGCCATTGGACTGATCAGAGTGCTTCAGTGGGCTATGATCCTGGATTTTATAATCTGATATATGCAGCTCTATCATTTGCTCAGCCAGAAGGTTGCATGAAGCCATGCTTCACTCCAAATTACGAGCTCCTATGGTTTTTTTTTTCATACAAATCCACTTGGAAGAGTAATCAACAGGTTCTTGAGTATGATACCCCTGAAGAACTGCTATCAAATGAAGGCAGTTCGTTCTATAAGATGGTGCAAAGTACAGGAGCCGCATATGCCCAATATCTACGCAGCTTAGCATTCGGGAGTAAGTCAGATAGGGAAGAGAAAAAATGGCTTGCTTCGTCTCGCTGGGCTGCTGCAGCTCAATTTGCCCTTGCCGTCAGTCTCACCTCATCACAGAATGACCTGAAAAGATTGGAAGTGGAAGAAGAGAATAGCATACTCAAGAAAACAAGGGATGCTGTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAGAGAAATCGAGGAATCTTTAGACCGATACCAAATATCCTCGGACAGTTGGTGGTCATTACTCTACAAGATGATTGAAGGTATGTATAACTTTGTGCCATCTTTTACATAG 2337 0.4146 MLGRRISEVETLAFKSIECKPWWEIGNDLSQFLGPLILNQLLESMQNGDPAWIGYVLAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAKALQAWYRSSPDFSSLFYPYTALNLCYAWESSFQSKVQNVRDDELSWFRKASLLGALNGFILNNIPVFVTVISFGMFTLLGGNLTPARAFTSLSLFAVLQFPLFMLPNIITQKREYFLPNPPLEPGLPAISIKNGNFSWDSKAERPTLANINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPAVVGSTVVMRGTVAYVPQVSWIFNATVRDNVLFGSAFDPIRYERAIDVTELRHDLELLPGGDLTKIGERGVNISGGQKQRVSMARAVYSKSEYARHVPPTIKKTEREKDNSAAKVFDKCIKGELRGKTRVLVTNQLHFLSQVDXIILIHEGTVKEEGTFEKLSNQGPLFQKLMENAGKMEECEEEKVDTETADPKSSSKQVANGELDDTAKSGSKAKEGKSVLIKLEEXETGVVSMKVLARYKTALGVLWVVVILFGCYFLTEVLRISSSTWLSHWTDQSASVGYDPGFYNLIYAALSFAQPEGCMKPCFTPNYELLWFFFSYKSTWKSNQQVLEYDTPEELLSNEGSSFYKMVQSTGAAYAQYLRSLAFGSKSDREEKKWLASSRWAAAAQFALAVSLTSSQNDLKRLEVEEENSILKKTRDAVITLQGVLERKHDREIEESLDRYQISSDSWWSLLYKMIEGMYNFVPSFT* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1525 778 CDD ABCC_MRP_domain1 252 457 - -
Amo19g1525 778 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 638 679 - -
Amo19g1525 778 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 237 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g1525 778 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 25 126 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g1525 778 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 23 127 - -
Amo19g1525 778 Gene3D - 247 506 IPR027417 -
Amo19g1525 778 CDD ABC_6TM_ABCC_D1 23 234 IPR044746 GO:0140359
Amo19g1525 778 MobiDBLite consensus disorder prediction 485 518 - -
Amo19g1525 778 Pfam ABC transporter 270 397 IPR003439 GO:0005524
Amo19g1525 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 479 IPR027417 -
Amo19g1525 778 Gene3D ABC transporter type 1, transmembrane domain 147 238 IPR036640 GO:0005524|GO:0016021
Amo19g1525 778 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 148 606 - -
Amo19g1525 778 ProSitePatterns ABC transporters family signature. 378 392 IPR017871 GO:0005524
Amo19g1525 778 Gene3D ABC transporter type 1, transmembrane domain 23 139 IPR036640 GO:0005524|GO:0016021
Amo19g1525 778 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 638 679 - -
Amo19g1525 778 SUPERFAMILY ABC transporter transmembrane region 27 390 IPR036640 GO:0005524|GO:0016021
Amo19g1525 778 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 254 480 IPR003439 GO:0005524
Amo19g1525 778 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 148 606 - -
Amo19g1525 778 Pfam ABC transporter transmembrane region 26 129 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g1525 778 Pfam ABC transporter transmembrane region 148 225 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g1525 778 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 23 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1525 Amo-Chr19 35000161 35047951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1525 252 508 Calmodulin-binding Proteins AT2G36910 25.818 1.28e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1525 - - gmx:100801762 689.108