Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1492 ATGGAGAGCGACACGCTTCTTCCTCACACCACTGTTTCTTGGACCGAACACAGCAATGACATTGGAATTTCCATGAATGCCCCTCTCACTTCCTTCAAATCCATACTCCAACCTCCTCCAATTACCATAAACCCCTTCCCGTTCCCACAACAACATACCGTACCCAATCTCACTACTACTGCTGATGATGACAACTTTCTCACACACCAAAACATGGACTCCTTCGCTCCGGAACACTCTTTCTTTACTCCCAAAGCCTCTTTCTTCAACAACAATCCTTTTGATAATGCCTTCGATTTGGGACCTGACATCGGTTTCTTCTTCTCCGGGAACCATTCTTCTCAAACTGGCTCGCCTGATATCCCGCCGGCGACTCGGCTGCTCCCGGCGGGGGCCACCGACGATGATCCCGTGGCGCTGGGTGCTGGATTTGGTGCCTCCGCTGCGTTTGAAATGGAGGCTGTTGGTGGCTCTGGAAACGCTCTGTTTTCGGGCAGGGGAAAGGGATTGGAAGCTTTGGTAGTGAGTAATTTGAAGAGGGTGCAGGAAGTTGAAGAAGCTAGCAATGAGGGTTCAATGTGGAATTCTGAAGAGGATGATGAGAGAACTGATGAGGTGGTGGTTGAGGAGAGTGGGAAGAAGAAGAAGAAGAAGAAGGGGATGCCGTCCAAAAATCTTATGGCGGAGAGGCGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAATATTAGCAAGATGGACAGAGTTTCGATACTTGGAGATGCAATTGACTACATGAAGGAGCTACAGCAGCGGGTCAATGATCTTCAAAATGAACTGGAGTCAACTCCAACTAGCTGTTCGCCATCATCTTCCACCAGCATTCAACCTTTGACACCCACACTGCAAACCCTTTCTTGCCGGGTGAAGGAAGAACTGTGTCCGATGCCAATCCCAGGAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGACGGTAAAGCTATCAATATTCACATGTTTTGTAGCCGCCGACCAGGTCTTCTGGTCTCTACAATGCAGGCTCTGGATAACCTCGGATTAGATGTTCACCAAGCTGTTATTAGCTGCTTCAATGGTTTTGCTTTAGACATCTTTAAAGCTGAGCAATGCAGAGAAGGGCAAGATGTGCTTCCTGAGGAAATCAAAGCAGTTCTGCTGGATTCAGCAGGTATCCATGATATGATGTGA 1230 0.4813 MESDTLLPHTTVSWTEHSNDIGISMNAPLTSFKSILQPPPITINPFPFPQQHTVPNLTTTADDDNFLTHQNMDSFAPEHSFFTPKASFFNNNPFDNAFDLGPDIGFFFSGNHSSQTGSPDIPPATRLLPAGATDDDPVALGAGFGASAAFEMEAVGGSGNALFSGRGKGLEALVVSNLKRVQEVEEASNEGSMWNSEEDDERTDEVVVEESGKKKKKKKGMPSKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRVSILGDAIDYMKELQQRVNDLQNELESTPTSCSPSSSTSIQPLTPTLQTLSCRVKEELCPMPIPGNQTAKVEVKVRDGKAINIHMFCSRRPGLLVSTMQALDNLGLDVHQAVISCFNGFALDIFKAEQCREGQDVLPEEIKAVLLDSAGIHDMM* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1492 409 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 185 409 - -
Amo19g1492 409 MobiDBLite consensus disorder prediction 186 226 - -
Amo19g1492 409 Coils Coil 259 286 - -
Amo19g1492 409 MobiDBLite consensus disorder prediction 206 226 - -
Amo19g1492 409 Gene3D - 209 284 IPR036638 GO:0046983
Amo19g1492 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Amo19g1492 409 SMART finulus 226 275 IPR011598 GO:0046983
Amo19g1492 409 PANTHER BHLH TRANSCRIPTIONAL FACTOR 185 409 - -
Amo19g1492 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 290 IPR036638 GO:0046983
Amo19g1492 409 CDD bHLH_AtAMS_like 223 281 - -
Amo19g1492 409 Pfam Helix-loop-helix DNA-binding domain 227 270 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1492 Amo-Chr19 33717213 33723263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1492 92 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.729 1.83e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g1492 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1492 - - ahf:112779394 743.421