Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1484 TTAAATGATGATTCAGATGAAGCAGCAGGGAGTTGTTCATCAGAGGTGGAAGGAATTGAATTTGGATATGGGACACGTGGCGTTGGAGATAAAGAGCTTAAGGAAATGTTGCTTCGTAAGTACAGTGGTTACCTTAGTAGCTTGAGAAAGGAGTTTCTAAAGAAAAGGAAAAAGGGTAAGCTTCCTAAAGATGCAAGGATTGCTCTCATGGATTGGTGGAACTCCCACTATAGATGGCCTTATCCTACGGAGGAGGAGAAATTGATGTTATCAGAGATGACTGGATTGGACATAAAGCAGATAAACAATTGGTTCATAAATCAGAGGAAACGCCATTGGAAACCATCTTCAGAGATGCGATTTGGTGTCATGGAAGGTGTAAGTGGTGCTGCACATGGCACCATATTAGAACATATGTAA 420 0.4119 LNDDSDEAAGSCSSEVEGIEFGYGTRGVGDKELKEMLLRKYSGYLSSLRKEFLKKRKKGKLPKDARIALMDWWNSHYRWPYPTEEEKLMLSEMTGLDIKQINNWFINQRKRHWKPSSEMRFGVMEGVSGAAHGTILEHM* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1484 139 Pfam Homeobox KN domain 72 111 IPR008422 GO:0003677|GO:0006355
Amo19g1484 139 SUPERFAMILY Homeodomain-like 54 124 IPR009057 -
Amo19g1484 139 ProSiteProfiles ELK domain profile. 32 52 IPR005539 GO:0003677
Amo19g1484 139 SMART HOX_1 54 119 IPR001356 GO:0003677
Amo19g1484 139 SMART ELK_2 32 53 IPR005539 GO:0003677
Amo19g1484 139 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 126 - -
Amo19g1484 139 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Amo19g1484 139 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 24 126 - -
Amo19g1484 139 CDD homeodomain 78 116 IPR001356 GO:0003677
Amo19g1484 139 Gene3D - 50 122 - -
Amo19g1484 139 ProSiteProfiles 'Homeobox' domain profile. 52 115 IPR001356 GO:0003677
Amo19g1484 139 Pfam ELK domain 32 53 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1484 Amo-Chr19 33514212 33515999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1484 30 127 Homeobox Transcription Factor Family AT1G62360 71.429 2.66e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo19g1484 Homeobox_KN 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1484 - - gmx:100786114 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1484 19 33514212 33515999 Amo19g1484 19 33514212 33515999 ECH