Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1474 ATGAATGAATCATCTTCAAATCAGTTGAATGACTGCGATTTGGATGATTCTTCTGAAACGCATCAATTTGATGAGACTAGCTGTGTTGTGGACGAAAAATTTGTCCCAAAGGTGGGAATGATTTTCAAGACCCTAGAAGGAGCTAGAAAGTTTTACAAATATTATTCCAAACTTGTTGGTTTTTCCACCAAAATAAGCAACACGACTCGGGATGGAGACAAGATTAAGAATCAACTAATTGTATGCTCTAGAGAGGGGAGGTGGAAATCAAAGATATCTCCAACTTTGAAGACAAATGCTTCATGTGGGTTAAATTGTCCGGCCAGAATTTATGTACACATAATGAAGGATGTTGATCTTTGGACAATTTCCAAAATTGTTTTGAATCACTCACATCCTTGTTGTCCAAACCAGGCTGAGATGCTCAAACAACACAGGGAGCTTAGCATAATGCATGTTTTCGGTTCACCACAACTTATAAATTTGGTTCGGTTTGCAGAGCTGTACGAGGATCGGCATATATGGATTCTGGTTTACTTGGATCACCACTTTTGGGCCGAGATGAGAAGCACACAAAGGAGTGAGAGCATGCATTCATTTTTCAACAAGTTCATCACATATAATAGCTCCTTGAGACAATTTGTGAAGCAATACGACAATTGCCTCGCAAGCAGAGAACAAACAGAGAGAGAATTCAATACTGCAGATTTTTACACTTGTGTATATACCCATGAGAAGTTCAGGGAAGTTCAAGCTCAATTTAGAGGTAAAGTGAATTGTATCACAAGATCAATGCATTCCACCCTGGGTTTCACAACATATGAAGTCATAGAGCAGGTTTTCAACTCCACATTCAACAAGTTTGTCGTCACCTACGACGCAGTATCACGAGATGTAAAGTGCCATTGCTTGCTGTTTGAATCTAGGGGCATATCGTGCCGCCATTCCCTAAGTGTTCTAAGCTTTGAGCGAGTGGATAATGTGGCACCTAAATACATATTGGAACGTTGGAGCAAGAACATAAAGAGGAGGTATACACATATCAAGAGCAACCAAGATGAACCTGTACTGGAGCCAAGAAGTAAGAGATTTGATGAATTGTTGAACCTTTTAGACTCCGAATCATCGATTCAGTCAAGCTCCACTCTTTACAATACACCAGATATGAATTATCCAAGACAGGATTTTACAAAATATTTGAAACGAGGAAATACAAAAACAATCAGAAATCCGGTCGAGTATCATCTTCTTTGTCCAATAGGCCACCCACGGTGCCGGGGGAGCATCAAGTCCATCCAAGTGAGGGAACTTGGTTTCATGGAAGTAAATCAGCATCAAAACAAAAACACAGCCCTCAACGGACTATTTCTTCCCCTTTTTCTTGTTTTCGATTCCCTTTCTCAAGAAGCTGAGCACATGACATGCCCAATCCTACTGTCGGATGTTGTCCACACAAAAGATAGGCGGCTTATGGATCGCGGAGGCCATGCTTACCGTCGTCCGCAATAA 1509 0.4089 MNESSSNQLNDCDLDDSSETHQFDETSCVVDEKFVPKVGMIFKTLEGARKFYKYYSKLVGFSTKISNTTRDGDKIKNQLIVCSREGRWKSKISPTLKTNASCGLNCPARIYVHIMKDVDLWTISKIVLNHSHPCCPNQAEMLKQHRELSIMHVFGSPQLINLVRFAELYEDRHIWILVYLDHHFWAEMRSTQRSESMHSFFNKFITYNSSLRQFVKQYDNCLASREQTEREFNTADFYTCVYTHEKFREVQAQFRGKVNCITRSMHSTLGFTTYEVIEQVFNSTFNKFVVTYDAVSRDVKCHCLLFESRGISCRHSLSVLSFERVDNVAPKYILERWSKNIKRRYTHIKSNQDEPVLEPRSKRFDELLNLLDSESSIQSSSTLYNTPDMNYPRQDFTKYLKRGNTKTIRNPVEYHLLCPIGHPRCRGSIKSIQVRELGFMEVNQHQNKNTALNGLFLPLFLVFDSLSQEAEHMTCPILLSDVVHTKDRRLMDRGGHAYRRPQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1474 502 SMART 26again6 299 326 IPR006564 GO:0008270
Amo19g1474 502 ProSiteProfiles Zinc finger SWIM-type profile. 288 324 IPR007527 GO:0008270
Amo19g1474 502 Pfam FAR1 DNA-binding domain 50 135 IPR004330 -
Amo19g1474 502 PANTHER OS03G0843700 PROTEIN 19 145 - -
Amo19g1474 502 PANTHER OS03G0843700 PROTEIN 167 378 - -
Amo19g1474 502 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 145 IPR031052 GO:0006355
Amo19g1474 502 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 378 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1474 Amo-Chr19 33064334 33068674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g1474 FAR1 2e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1474 - - adu:107484182 378.637