Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1472 ATGCTTCTGAGCAGAATAGGAAGTGTTAGTGAAGTGAAGAGAAGGGAGCACCTCAGAATCATGGATTTCAAGGGTTTCCTAAACGACTTGCAGGATTGGGAACTTTCTCGAAAACACGAAGAAGCTCCACACACGAACAAAAACCCTCAAAAGGAAAATGATTCAGCTTCTCAAAATACTGGATTGGGGGCCTCAAGGCGCGATACTCTTTCTTTTGATAATGCAAGAAGTAACTCTCGACAGTATAATGATCCATTTAGCCGTGTGACTAGTAGTTTTGTTTCCGAAGATATCCCTGACGCCGTGTCCGAGAAAGATCTGGGTAATGAGTATTTCAAGCAGAAAAAATATAAGGAAGCTATCGACTGCTATTCAAGAAGCATTGCCTTCTCGCCTACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACATCTAGAAAAGAACTCGCGAAATTTAAAGAATCCATGGAGGATGCCGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATTAAGAAACAGCATGCTGATGCCAAGTCTTTGTACGACAAAGCAATGCTTGATAAAGTATCTGGAGCTCTGAAAAGCACTGTAAAGGGCACTCAAAAAGAAGTGAAGTTGGACACAAAAAAGAATGGAGGCAGCATCCATCCCATTTCACATATTACTCAAAAGTCTGGGCCAGCTAAGGGTAATGAGCAGCAAATTCCAGCTAAAGATTCATACTTAATGGAGGAGGTAGATAGTAATAAAATCAGAAGCAGGGCTCAAAGACAAGAGGCAGATGGTTCTAGTTCAAGCAACAACGTGCAGCATGTTAAGAGAAATCAGAAAGGTAGTAAGCAGCACGTGCAAACATCTATTCAACAACTTGCTTCTCGTGCAGCTTCTCTAGCTACGGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGACTTGCCTGTTAAAGGCCATATCTCCTCATGAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCTTGCTGATTGACATCATCAAGTGTGTGGCATCTTTTTTCAATGAACAAATGGATCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTGATGTGCCTTCCATCAACAGATAAAGATGACTTACGCAAGATCTGGGACGAAGTGTTCTGTGGCGAGGCAACGCCAATGGAGTTCGCCGAGATTCTGGACAACCTGCGATCGAAATACTGCCTTGGGCAGTAG 1401 0.4268 MLLSRIGSVSEVKRREHLRIMDFKGFLNDLQDWELSRKHEEAPHTNKNPQKENDSASQNTGLGASRRDTLSFDNARSNSRQYNDPFSRVTSSFVSEDIPDAVSEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATSRKELAKFKESMEDAEFALRLEPNNQEIKKQHADAKSLYDKAMLDKVSGALKSTVKGTQKEVKLDTKKNGGSIHPISHITQKSGPAKGNEQQIPAKDSYLMEEVDSNKIRSRAQRQEADGSSSSNNVQHVKRNQKGSKQHVQTSIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQTCLLKAISPHELPKIFKNALSTALLIDIIKCVASFFNEQMDLAVSYMEHLTKVPRFDMIVMCLPSTDKDDLRKIWDEVFCGEATPMEFAEILDNLRSKYCLGQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1472 466 MobiDBLite consensus disorder prediction 49 68 - -
Amo19g1472 466 Pfam Potential Monad-binding region of RPAP3 342 431 IPR025986 -
Amo19g1472 466 MobiDBLite consensus disorder prediction 231 270 - -
Amo19g1472 466 ProSiteProfiles TPR repeat profile. 168 201 IPR019734 GO:0005515
Amo19g1472 466 SUPERFAMILY TPR-like 94 213 IPR011990 GO:0005515
Amo19g1472 466 SMART tpr_5 168 201 IPR019734 GO:0005515
Amo19g1472 466 SMART tpr_5 101 134 IPR019734 GO:0005515
Amo19g1472 466 SMART tpr_5 135 167 IPR019734 GO:0005515
Amo19g1472 466 MobiDBLite consensus disorder prediction 249 264 - -
Amo19g1472 466 MobiDBLite consensus disorder prediction 39 68 - -
Amo19g1472 466 MobiDBLite consensus disorder prediction 284 320 - -
Amo19g1472 466 Pfam Tetratricopeptide repeat 134 164 IPR001440 GO:0005515
Amo19g1472 466 Pfam Tetratricopeptide repeat 105 133 IPR001440 GO:0005515
Amo19g1472 466 Gene3D Tetratricopeptide repeat domain 90 199 IPR011990 GO:0005515
Amo19g1472 466 ProSiteProfiles TPR repeat profile. 101 134 IPR019734 GO:0005515
Amo19g1472 466 MobiDBLite consensus disorder prediction 292 320 - -
Amo19g1472 466 PANTHER OS05G0129900 PROTEIN 17 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1472 Amo-Chr19 32765324 32770491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1472 105 197 U-box Gene Family AT3G07370 31.915 7.35e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1472 K23002 - gmx:100784528 596.66