Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1468 ATGGCAATTAAGGAATCAGAGATGGCACTTTCATTATCATCATCATCATCACAACCATCACAAGTAGATGTTCACTGCTTTCAAAGCCTTAAGAATAATGCAAATGCAAGTTCTCTCAATCGTGACACCTTCTACCTCAAACTCACTCACTTGTTCGATTCCTCTGGACTCACCCTAATTTTCAATGTCCGAGAAACACTGCTGGACTTGTACCTAGTTTACTTGGAGGTGACCACAAGAGGAGGATTCCATCAGGTTAGTCAAGAAAAGAAATGGGGCGAAGTGGCCTCGGCCCTGAGATTGGAAGGAAACATTGCAAGATTATCTGCTCAAGTTGAAAAGCTCTACTTGCAACTTCTTTACCAATTCGAGCAATTGTACTTCTACAGAGCTCCTACAAAGAGCAGCAAGACCACAGGTTTGCACAAGAGGAAGCAAATCTCATCCGAAACGACAGAAGAAGGAGGAGCTGGGTTGGTCAAAGAGCAAGCTCTTCTTCTCGAACCTTCGGATGGCAAAGAAAAGAAGAAACGCCGAGGCATGGCACAAGGACAAAGAAGTGCATACCAGATGTTCCTGAAGCAAGAATGCACTCGGTTGAAAAGTTGTAACTCGACCTCAACCGGAAAGGGTATTCTCCACACGGCTATCGATTCGTGGAGGAATATGTCTCCACTTGAGAAACAGCCATATGTGGATGAATTCAAGAAGAACCAGGAAAAGTTCAAGAAAGGAATGATTATTGATGACAATGGAGAGCACAAAATAATGCAAAATGAGAAGGAAGAGAAGAACATGGCTCCTGCTAGTGTGTGTAATAGTGAGTACTACCAAGTAACTTCACAACCTGAGCCAGATAACAATAACTACACTACTCTCAACAACAATGCAGCAATAGGCTTAGCTTTTAATGTGACTGAAAAGTTTCCCAAGGATTCCGTGTTACTATTTGGCTTATAG 960 0.426 MAIKESEMALSLSSSSSQPSQVDVHCFQSLKNNANASSLNRDTFYLKLTHLFDSSGLTLIFNVRETLLDLYLVYLEVTTRGGFHQVSQEKKWGEVASALRLEGNIARLSAQVEKLYLQLLYQFEQLYFYRAPTKSSKTTGLHKRKQISSETTEEGGAGLVKEQALLLEPSDGKEKKKRRGMAQGQRSAYQMFLKQECTRLKSCNSTSTGKGILHTAIDSWRNMSPLEKQPYVDEFKKNQEKFKKGMIIDDNGEHKIMQNEKEEKNMAPASVCNSEYYQVTSQPEPDNNNYTTLNNNAAIGLAFNVTEKFPKDSVLLFGL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1468 319 Pfam HMG-box domain 183 246 IPR009071 -
Amo19g1468 319 ProSiteProfiles ARID domain profile. 38 128 IPR001606 GO:0003677
Amo19g1468 319 SMART bright_3 39 129 IPR001606 GO:0003677
Amo19g1468 319 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 145 311 - -
Amo19g1468 319 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 31 150 - -
Amo19g1468 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 145 311 - -
Amo19g1468 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 31 150 - -
Amo19g1468 319 Coils Coil 98 118 - -
Amo19g1468 319 Gene3D High mobility group box domain 168 247 IPR036910 -
Amo19g1468 319 SUPERFAMILY HMG-box 171 244 IPR036910 -
Amo19g1468 319 SUPERFAMILY ARID-like 37 130 IPR036431 GO:0003677
Amo19g1468 319 SMART ARID_2 35 124 - -
Amo19g1468 319 Pfam ARID/BRIGHT DNA binding domain 41 124 IPR001606 GO:0003677
Amo19g1468 319 Gene3D - 23 147 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1468 Amo-Chr19 32700231 32703119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1468 8 139 ARID Transcription Factor Family AT3G13350 29.577 7.72e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo19g1468 ARID 5.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1468 - - adu:107465197 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1468 19 32700231 32703119 Amo09g0890 09 17000410 17002892 hybridization