Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1453 ATGTCTCAAATCTTTGATTACCTGGCTGATTTAAATGCAAGAAAACTACAATGGAATTTCAAAGTATATGTAATACGTGTGTGGGAATTCTCTAACAGATACAATGAGAGAGAAGTTGGCACCATTGAAGGCACAAGGTTGCAAGTTTCGATCCCTAAATCCCTGGTGAGCAGGTGGCGGGGTGTCTTAGTTCAGTTTCAAATGTATATTATGACCAACTTCGTTGTTGTTGACAACCAAAAGAGTAACATATTAAGGGGAAAGTATTTATTATTCTTCAGTCATAGGACAATCGTCAGTCATATCGAGAATCCCAGTTTTCCGCTAAATGTTTTCCGATTCAGAACCATCCGTGAGTTACTAAATGCTGAGAAGATCGATGACTCTGCATTGTTTGACATGATTGGTGAAGTAGTTGGTAAAGAAGATCCAAAAGAGTTGATCACCAGCAAAGGAAAGGAGACTAAACGACTGGCTGTTATCTTGGAGGACCCAGAGTATCTACTTCGACACATGCAAGATGGAAGGGTTGAGCCACTAATAGTTGTGGTTCAGTATTTTAAGGCAACCAGATGGAATGGGAATACATCTGTCCAAAGCCACTTTGACATTTCACAGCTGCACATAGACCCCGACCTTAAAGATGTTGCTGAATTTAGGAGCGGGCTGCTTGGCGGTGAACCATCATCCTTTGTGAGGATTAGTCAAGTTCCATCAAAAACAGCTTGGTCAGGGGTTGAGGAGCTCAAACAAGGTGCTGTGTCAGTGAAAATAATTGAAGAAGTCCTTATCCAACATAAGGAAGATCCAGCTTGGATTGCTGCAAGTATTGTTGCGATTAATGTTACGAAAGACGATTGGTTCTATAAATCATGTAAAAAATGTCCAAAGAAAGTTGAAACTCCTATTGGAAACAGATATGAATGTGGGAAGTGTGGCCATACACATGGATCTGCAGCCCTAAGGTTCAAAGTCGAGGTGATGGTTTTTTATGGAACCGGTAGCATCCGATTGCTACTATGGGACAAGGAAACAAGTATGCTATTGAAGTGCTTTATTTGTTTACAGGTTATAGTAGGAGATGAATATCCCAAAACACTTGATAACATGATGGACAAAAGAGTCCTTTTCAAGATAAATATCAAGGAAGCCAATATTAATCAATTTGATCATGTGTACATGGTTATGAAAATCTGTGATGATGAGGATATCATTGACAAAAATCTTCCCAAAGAGTTGTCTACTAATCTTCCGAGTAATGTCAGTGAAGATGGCTGCAACAACTATTTGGAAATTTTAGAAAATGTGGCTAATCTTAAAACTGATTGTGATACTGAGTCTTCTATGGATGTTGTGGAGGAGTGCATCTCATCCCTCAAGTACAATACACCACCTAAAAAAATTACCAATGGATTGAAGAATTCTCCTCTAAGTCTGAATGAAGATGAGGAAGAAGGCCAGCTGTCAACCAACAGGTTCAGTAGGAAGATGGGAAAGAGACAGAAATGTGTTAACTTTGATGCAGATATGAGTAGTTGA 1539 0.3931 MSQIFDYLADLNARKLQWNFKVYVIRVWEFSNRYNEREVGTIEGTRLQVSIPKSLVSRWRGVLVQFQMYIMTNFVVVDNQKSNILRGKYLLFFSHRTIVSHIENPSFPLNVFRFRTIRELLNAEKIDDSALFDMIGEVVGKEDPKELITSKGKETKRLAVILEDPEYLLRHMQDGRVEPLIVVVQYFKATRWNGNTSVQSHFDISQLHIDPDLKDVAEFRSGLLGGEPSSFVRISQVPSKTAWSGVEELKQGAVSVKIIEEVLIQHKEDPAWIAASIVAINVTKDDWFYKSCKKCPKKVETPIGNRYECGKCGHTHGSAALRFKVEVMVFYGTGSIRLLLWDKETSMLLKCFICLQVIVGDEYPKTLDNMMDKRVLFKINIKEANINQFDHVYMVMKICDDEDIIDKNLPKELSTNLPSNVSEDGCNNYLEILENVANLKTDCDTESSMDVVEECISSLKYNTPPKKITNGLKNSPLSLNEDEEEGQLSTNRFSRKMGKRQKCVNFDADMSS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1453 512 Gene3D - 239 407 IPR012340 -
Amo19g1453 512 SUPERFAMILY Nucleic acid-binding proteins 258 399 IPR012340 -
Amo19g1453 512 PANTHER REPLICATION FACTOR A 1, RFA1 57 420 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo19g1453 512 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE 57 420 - -
Amo19g1453 512 Gene3D - 106 224 IPR012340 -
Amo19g1453 512 SUPERFAMILY Nucleic acid-binding proteins 113 221 IPR012340 -
Amo19g1453 512 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Amo19g1453 512 MobiDBLite consensus disorder prediction 470 484 - -
Amo19g1453 512 MobiDBLite consensus disorder prediction 470 490 - -
Amo19g1453 512 Pfam Replication factor-A C terminal domain 279 390 IPR013955 -
Amo19g1453 512 Gene3D - 7 104 IPR012340 -
Amo19g1453 512 CDD RPA1_DBD_C 266 398 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1453 Amo-Chr19 32071432 32079585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1453 8 351 Core DNA Replication Machinery Family AT2G06510 22.047 7.91e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1453 - - ahf:112803472 716.457