Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1429 ATGAATAGAACATTGGCTGAAAGAGTTAGGTGCTTATTGTCACAGTCTGGATTGGCAAAATCCTTTTGGGTGGTCCGGGCGGCGTGTCCCGCGGTGTTTTGCGGCGGAAAAGTATTTGGAACTAAGAGCTCTCTCCGTCTTCCCACCGCAATCCACTCTTCCGATGGCTTCCGCTTCTATTTTGTAGCAGTGAACATAACATTCCGAAACAAAGCAGGGCCAAGCAAGCACCAAGCAGTTACCGTTAGAAGCGGAGCCGACTTATCAGCCTTCTACATGTGCAGCTTCGAGGGCTACCAAGACACACTCTACGCCCATTCCATGCGTCAATTCTACAGCGACGGCCACATTTATGGCACCATTGATTTTATTTTCGGTAACGCCGCCGTAGTCTTCCAAAATTGCAACATCTTCTCCCGCCTCCCTATGACTGGCCAATTCAACTCAATTACCGCACAAGGCAGAACCGATCCCAACCAAAATACCGGAATCTCCATACACAACGCAAAGATTCGACCCGCTGACGATTTGGCCCCTCGCGTTGGTGTTGTGAAAACGTACCTTGGTAGGCCGTGGAAGCAATACTCGAGGACGGTTTTATCGAAAATTATAAAAAAAAACATTCATTTAATATGA 636 0.478 MNRTLAERVRCLLSQSGLAKSFWVVRAACPAVFCGGKVFGTKSSLRLPTAIHSSDGFRFYFVAVNITFRNKAGPSKHQAVTVRSGADLSAFYMCSFEGYQDTLYAHSMRQFYSDGHIYGTIDFIFGNAAVVFQNCNIFSRLPMTGQFNSITAQGRTDPNQNTGISIHNAKIRPADDLAPRVGVVKTYLGRPWKQYSRTVLSKIIKKNIHLI* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1429 211 Gene3D - 40 209 IPR012334 -
Amo19g1429 211 SUPERFAMILY Pectin lyase-like 60 201 IPR011050 -
Amo19g1429 211 Pfam Pectinesterase 60 202 IPR000070 GO:0030599|GO:0042545
Amo19g1429 211 ProSitePatterns Pectinesterase signature 2. 117 126 IPR033131 -
Amo19g1429 211 PANTHER PECTINESTERASE 61 201 - -
Amo19g1429 211 PANTHER PECTINESTERASE 61 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1429 Amo-Chr19 31420150 31424013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1429 61 200 Carbohydrate Esterase AT4G02330 75.000 6.11e-74 232