Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1413 ATGGGCGTTGTTTGCGGGAATTCAGAACCGACGATTGAGATTAAAGATCTGAAATTCACGTACCCCGGCATCGACGGTCACCCTCCGCCGGGCTCCGCTCCTCTCATTCAGGACTTCTCTCTCTCACTCTCTTCCGGCGATCGATGCCTCCTTGTTGGATCCAATGGCGCTGGGAAGACGACGATTCTCAAGATATTGGGAGGGAAGCACATGGTCGAACCGGGAATGGTTCGTGTGCTTGGAAGATCGGCTTTTCATGACACCAATTTGACGTCCTCTGGTGATCTCTGTTATCTTGGTGGCGAGTGGAGGCGAGATGTTGCTTTCGCGGGTTATGAGGTTGCAATACAAATGGATGTTTCTGCTGAAAAGATGATATTTGGTGTGGCTGGGACTGATCCTGAAAGAAGAGCAGAGCTAATCAAGGTATTGGATATAGATCTCTCTTGGAGATTGCATAAAGTATCTGATGGTCAAAGAAGAAGAGTTCAAATTTGTATGGGTCTCCTCAAACCATTCAAGGTTCTTCTACTCGATGAGATAACAGTCGACCTTGATGTTCTAGCAAGAGCTGACCTTTTGAAGTTCCTAAGAAAGGAATGTGAAGAGAGGGGTGCTACTATTATATATGCAACACATATATTTGACGGTCTTGAGGATTGGCCAACTAATATAGTTTATGTAGCGCATGGAAAGCTGCAATTAGCCATGCCTATTGATAAAGTCAAGGAAACTAGCAAACTGTCATTAATGAGAACAGTTGAATCTTGGCTGAGGAAAGAACGCGATGAAGATAGAAGGAAAAGAAAAGAGAGGAAGGCAGCTGGTCTTCCTGAATTTGAAAAGCAAGTTGATGGAAGCCGCGTAGCAGGGGATCCAGCTCGTGCTGCTGTTCGAGTAATCAACAATGGCTGGGCAGCAGGGCGATTGACGTCTACGGTTGCTGGTGAGGAGAACTTTATGCTCAGCTCAAACAGAGTATTGAGGCAGTAG 993 0.4612 MGVVCGNSEPTIEIKDLKFTYPGIDGHPPPGSAPLIQDFSLSLSSGDRCLLVGSNGAGKTTILKILGGKHMVEPGMVRVLGRSAFHDTNLTSSGDLCYLGGEWRRDVAFAGYEVAIQMDVSAEKMIFGVAGTDPERRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPIDKVKETSKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFEKQVDGSRVAGDPARAAVRVINNGWAAGRLTSTVAGEENFMLSSNRVLRQ* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1413 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 249 IPR027417 -
Amo19g1413 330 Gene3D - 8 287 IPR027417 -
Amo19g1413 330 Pfam ABC transporter 37 182 IPR003439 GO:0005524
Amo19g1413 330 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 9 329 - -
Amo19g1413 330 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 12 255 IPR003439 GO:0005524
Amo19g1413 330 SMART AAA_5 45 232 IPR003593 -
Amo19g1413 330 PANTHER ABC TRANSPORTER I FAMILY MEMBER 20 9 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1413 Amo-Chr19 30804939 30808624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1413 12 209 Calmodulin-binding Proteins AT2G36910 24.186 3.61e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1413 K12608 - gmx:100782386 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1413 19 30804939 30808624 Amo19g1413 19 30804939 30808624 ECH
Amo19g1413 19 30804939 30808624 Amo09g0849 09 15273710 15278166 hybridization