Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1408 ATGATAAGCTTGAAAACCTTGGACTTATCTCAAAACTTTTTGTCTGGTTCAATTCCAAAATCTTTAGAGTCTCTTGCTGATCTTAAATATGTGAACTTTTCCTACAATAGACTAGAAGGAGAGATTCCCAGTGGTGGACCATTTGAAAATTTTACTGCCAATCTTTCATGCATAATGAAGCTCTTTGTGGCAAACCTCATTGGGAAAAAGATCAAGGAAAAAGCTGCTTCTGAAATGCATACTGCCCATAGTTCTTTCAATAATTTTGGTGGTTGCATTCATAACAGTTCTACAGAGGAAAAGAAAAATGGGGTAAATCAAAATGAAAAGAATTCATCATCCACTTTAGGAGCACTAAGAAAGGTTTCCCTTTTGGTTCTGTGTATCACGGAATACTCTGATGGATTGAAGGTTGCCATTAAAGTGCTTCATTTGGACTTGGAAAATACTTCAAAGAGATTTGAGGTAGAATGCAATGCAATGTGCAATCTACGCCATCGCAATCTTGTTAAGATTATCAGCAGTTATTCCAATAATCTTGATTTCAGATCCTTGGTGATGGAGTTCATGTCAAACGGAAGCCTTGACAAATGGTTATTCTCAGATAACTATTATGTTGCATCTGCATTAGAATATCTCCATCATGGTTCTCCAACGCCAGTTGTTCATTGCGACTTGAAACCTGCTAATATTTTATTAGATGATGACATGGTTGCACACAGTATGGATCTAAGGGAACCATCTCAATCAAAGGTGATGTGTATGTATAGCTATGGGATTATGTTAATGGAAGTTTTCACAAGAAAGAAGCCAACAGACAATATGTTTGCAGAAGGATTTGGTTTGAAAAATTGGATTAGTGAATCAAAATCCAATACAATCATGGAAGTTATTGATTCCACGTTGCTACAACATGATATTGATGACATATTGCCTCATACATCAACTATATATCTTGGCATTAGCGTTGAATTGTTCTGCAGATTTACCTGA 993 0.3605 MISLKTLDLSQNFLSGSIPKSLESLADLKYVNFSYNRLEGEIPSGGPFENFTANLSCIMKLFVANLIGKKIKEKAASEMHTAHSSFNNFGGCIHNSSTEEKKNGVNQNEKNSSSTLGALRKVSLLVLCITEYSDGLKVAIKVLHLDLENTSKRFEVECNAMCNLRHRNLVKIISSYSNNLDFRSLVMEFMSNGSLDKWLFSDNYYVASALEYLHHGSPTPVVHCDLKPANILLDDDMVAHSMDLREPSQSKVMCMYSYGIMLMEVFTRKKPTDNMFAEGFGLKNWISESKSNTIMEVIDSTLLQHDIDDILPHTSTIYLGISVELFCRFT* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1408 330 ProSiteProfiles Protein kinase domain profile. 105 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1408 330 Gene3D Transferase(Phosphotransferase) domain 1 117 247 - -
Amo19g1408 330 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 255 313 - -
Amo19g1408 330 Gene3D Transferase(Phosphotransferase) domain 1 248 315 - -
Amo19g1408 330 ProSiteProfiles Leucine-rich repeat profile. 3 26 IPR001611 GO:0005515
Amo19g1408 330 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 54 - -
Amo19g1408 330 SUPERFAMILY L domain-like 3 44 - -
Amo19g1408 330 SMART serkin_6 119 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1408 330 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 133 243 - -
Amo19g1408 330 SUPERFAMILY Protein kinase-like (PK-like) 128 275 IPR011009 -
Amo19g1408 330 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 133 243 - -
Amo19g1408 330 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 1 54 - -
Amo19g1408 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Amo19g1408 330 Gene3D Ribonuclease Inhibitor 1 78 IPR032675 -
Amo19g1408 330 Pfam Protein kinase domain 129 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1408 330 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 255 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1408 Amo-Chr19 30491318 30501129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1408 1 327 Receptor kinase-like Gene Family AT3G47570 27.021 2.86e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo19g1408 Pkinase 5.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1408 - K13420 mtr:MTR_0070s0020 275.018