Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1402 ATGACGACGCCGTTTTCGGCGGGGCTGAAGCACTTGGATGGAGGCGGAGGACTGGCGGTGCTCTCCAATTCCATCGACAAGGTTGATTCGTCCTCCACTTCCTCCTCGACGGCGCTCAGTGGCAGCGTCAAGTGCTCTAAGCTGGTAGACTCGCCCATTTTGATTTTCTTGTTCTTCCACAAGGCGATTCGGAACGAGCTAGACGCGCTGCACCGTCTCGCCATGGCATTCGCCACCGGCAACTCCTCCGATATCCAGCCTCTCTCCCAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCCGAAGACGAGGTGATTTTTCCAGCCCTTGATATACGTGTGAAGAATGTTGCAAAGACATATTCTCTTGAACACAAAGGTGAAAACAATCTTTTTGATCATCTATTTGAGCTGCTAAATTCTTCCACCCACAACGATGAAAGTTTTGCTAGAGAGTTAGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCTTTGCTTATTGAGAAGTTCTCTCTCGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCCGTGAACATGATGACAGAATTTCTTCCATGGCTTTCAAGATCCATATCACCTGATGAACGACTGGATTTGCAGAATTGCTTAATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCAAGTGGATGGAAGGGAGAAGCAGTGTTAACACAGTTGACAGTTGTGTAAAACATTCTCAAGTTCAATCTAGTAGTAGCCCATCAACTGGAAAACGGAAATATTCTGGATCTACCCTGGATGACTCTGATGCCATTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAGAAAAGAGCTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAATGTTCAGGGGATTTTACAAATCTATCCTCTTTTAATCAAAGATTGCAGTTCATTGCCGAAGTTTGTATATTTCATAGTATTGCTGAGGACAAAGTTATTTTTCCAGCAGTAGATGGAGAATTGTCATTTTTTCAGGAGCATGCTGAAGAAGAAAGCCAGTTTAATGACTTCCGGTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCTAATTCAGAAGTTGAATTCTTTTCAAAGTTATGCTCACATGCTGATCATATAATGGAAACCATAGAGAGACATTTCCATAATGAAGAAGTTCAGGTCCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGCGAACTTCTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAGCGCGTRCTTCCATGGTTGGTAGGATCATTAACTGCAGAAGAAACAAAGATGTTTCTGAGAAACATGCAGTTGGCAGCTCCAGAAATGGATTCTGCTATAGTTACACTCTTCTCTGGGTGGGCTTGCAAGGCTCGTATTGAAGGTCTATGTTTGTCTTCTGGTGCGTCAGGTTGCTGTCCTGTTCAAAGACTTTCTGATATTGAAGAAAACATTGCTTGGCCATCCTGCGCTTGTGCTTCCGCATCATCTGTAAGAGATTGTTTAGTATTAGACAAATCAGATGGGAACAGAAAGTCATTCAAGCGAAACTTATTAGAAACCCACAACAATGGAGATATCACTGAAAATCCAGAGACTGAAAATGTCCAAAAACAATGTTTTGCTACTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACAATTTGGGGCTGAGTTCTATTTCTACAGCCAAGTCCTTGCGGTCCTTGTCTTTCAACTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGTATGGGAAACAGAAAGCAGCTCATCTGATGTTGGATCTGCACAAAGACCAATTGATACCATATTTAGTTTCCACAAAGCTATACGAAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTAATGGTGATGAGATAGTTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTGGAGTCAAAAGAGGCACTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTATTTGAGGATATTTCCTGCGTTCTTTCTGAGCTTTCTATGCTTCACGAAGCCTTGCAGATGAACCATATGCCAGAGAACTTAAGTGAAAGTAATTTTAGAACATCTGATTCCAAGGGTAGTGAGAATATTAAAAAGTATAATGAACTCGCGACTAAGCTTCAAGGAATGTGCAAATCCATAAGGGTTACTCTGGATCATCATCTTTTCAGGGAGGAGTGTGAACTGTGGCCATTATTTGGGAAACATTTCACTGTAGAAGAACAGGACAAGATAGTGGGACGGATAATTGGAACAACTGGAGCTGAAGTTCTCCAATCAATGTTGCCATGGGTAACTTCCGCGCTTACTCATGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAAAACACTATGTTCAATGAATGGCTCACTGAATGCTGGAAAGATAGTCCAGCACCTATAACACAGATAGAATCATCAGATCATAACACTTCTCGAAGAGGTGCTGAATATCAAGAAAGCTTGGACCATAATGATCAAATGTTCAAGCCTGGTTGGAAAGACATATTCCGGATGAACCAGAATGAACTTGAGTCAGAGATCCGAAAGGTTTATCGTGATTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTGATGACAAGTCGTTGGATAGCTGCTCAGCAGAAATCACTGAAAGCCATAACTGAAGTAGCATCTAATGGTGAACAAATAGAAGGGCAGTCACCATCATTTCGGAACCCTGATAAACATGTGTATGGGTGTGAGCACTATAAGAGAAATTGTAAGCTACGAGCTGCATGTTGTGGCAAGTTAGTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCGATAGGGCCTAAATGCATGACACCTTCATGTAACGAACTTTCAATGGCAAAATACTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAACATATGCCGTGTCGGACGAGGGCTTGGGATTGATTATTTCCATTGCATGAAATGCAATTGCTGCTTGGGCATAAGATCACAATCACATAAGTGCCTGGAAAAAGGCTTAGAAATGAATTGCCCAATTTGTTGTGATGATTTATTCACGTCAAGTGCTCCAGTTAGAGCTCTGCCTTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCTATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCATTATTGGCTACTGAGGAGCTTCCTGAAGAGTATAAGGACCGGTGTCAGGACATACTCTGCCATGACTGTGACAAAAAGGGCACTTCACGCTTCCATTGGTTATACCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATTAAGGGTGAGGAATCAAATTCCAGCTGCTCTTACTCTTAG 3714 0.4187 MTTPFSAGLKHLDGGGGLAVLSNSIDKVDSSSTSSSTALSGSVKCSKLVDSPILIFLFFHKAIRNELDALHRLAMAFATGNSSDIQPLSQRYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAKTYSLEHKGENNLFDHLFELLNSSTHNDESFARELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSRSISPDERLDLQNCLIKIVPEEKLLQKVIFKWMEGRSSVNTVDSCVKHSQVQSSSSPSTGKRKYSGSTLDDSDAIGTHPIDEILLWHNAIRKELSEIAVETRKIQCSGDFTNLSSFNQRLQFIAEVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRCLIEGIQSEGATSNSEVEFFSKLCSHADHIMETIERHFHNEEVQVLPLARKHFSFKRQCELLYQSLCMMPLKLIERVLPWLVGSLTAEETKMFLRNMQLAAPEMDSAIVTLFSGWACKARIEGLCLSSGASGCCPVQRLSDIEENIAWPSCACASASSVRDCLVLDKSDGNRKSFKRNLLETHNNGDITENPETENVQKQCFATRSCCVPGLGVNSNNLGLSSISTAKSLRSLSFNSSAPSLNSSLFVWETESSSSDVGSAQRPIDTIFSFHKAIRKDLEYLDVESGKLSNGDEIVLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSMLHEALQMNHMPENLSESNFRTSDSKGSENIKKYNELATKLQGMCKSIRVTLDHHLFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTHDEQNKMMDTWKQATKNTMFNEWLTECWKDSPAPITQIESSDHNTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSLKAITEVASNGEQIEGQSPSFRNPDKHVYGCEHYKRNCKLRAACCGKLVTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPKCMTPSCNELSMAKYYCNICKFFDDERNVYHCPFCNICRVGRGLGIDYFHCMKCNCCLGIRSQSHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYKDRCQDILCHDCDKKGTSRFHWLYHKCGFCGSYNTRVIKGEESNSSCSYS* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1402 1237 CDD Hr-like 297 426 - -
Amo19g1402 1237 CDD Hr-like 645 805 - -
Amo19g1402 1237 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Amo19g1402 1237 Pfam Hemerythrin HHE cation binding domain 57 183 IPR012312 -
Amo19g1402 1237 Pfam Hemerythrin HHE cation binding domain 294 428 IPR012312 -
Amo19g1402 1237 Pfam Hemerythrin HHE cation binding domain 643 806 IPR012312 -
Amo19g1402 1237 CDD Hr-like 55 181 - -
Amo19g1402 1237 Pfam Ring finger domain 1118 1160 IPR001841 -
Amo19g1402 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1163 IPR013083 -
Amo19g1402 1237 SUPERFAMILY RING/U-box 1116 1165 - -
Amo19g1402 1237 SUPERFAMILY CHY zinc finger-like 985 1046 IPR037274 GO:0008270
Amo19g1402 1237 SMART ring_2 1119 1160 IPR001841 -
Amo19g1402 1237 Gene3D nmb1532 protein domain like 639 871 - -
Amo19g1402 1237 Gene3D - 1190 1231 - -
Amo19g1402 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 37 1234 - -
Amo19g1402 1237 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
Amo19g1402 1237 CDD RING-H2_Pirh2 1118 1161 - -
Amo19g1402 1237 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Amo19g1402 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Amo19g1402 1237 MobiDBLite consensus disorder prediction 266 286 - -
Amo19g1402 1237 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Amo19g1402 1237 MobiDBLite consensus disorder prediction 266 281 - -
Amo19g1402 1237 Gene3D nmb1532 protein domain like 297 444 - -
Amo19g1402 1237 Gene3D nmb1532 protein domain like 50 201 - -
Amo19g1402 1237 PANTHER CHY ZINC FINGER PROTEIN 37 1234 - -
Amo19g1402 1237 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1402 Amo-Chr19 29881343 29888883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1402 51 1237 C2H2 Transcription Factor Family AT3G18290 67.132 0.0 1645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1402 K16276 - gmx:100801725 2119.35