Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1391 ATGACAACTCGAATAGCGCCTGGTGTTGGCGCCAACTTGCTTGGCCAACACTCTGCCGAGAGGAATCAGGATGCCACCGCCTATGTCGGCAATCTGGACCCCCAAGTTCCCGAGGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCTGTCGTTAATGTCTATGTTCCCAAGGACAGAGTCACTAACCAACACCAGGGATATGGATTTGTTGAATTCCGTAGCGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTTTACGGCAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGACACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACCGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCGGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTACAAAAAGGACACTAAAGGGGAACGGCATGGCACGCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCCACTGCGCAGAAGAGTAGGCCTCATACGAGATTCGCCAGTGCACCTCCAACACTCGCCAATGTTGCTCAGGCTAATGGTACCGTTGCTGTTCCGGTGCCTCCTCACCCCTTTGCTAATGGAGTTGCTCCACCTCCCATTCCTGCCCTCCGACCACCACCACCCCCACCTCAAGCAGCAGCATTTCAGCCAATGCCAGGAGCTGGGCAACCAGCATGGCATCAACAGCAGCCTGGACTCCCGCCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCTGGTATGCCAATGCCACCACCTCCACAAGCTGTTTCGGCTCCTCCAAGGCCTCTTCCGCCACCAGCAGGAATGGTAGGCCAACCACCTGTTTGGCGACCACAACCACCGCCACCGCAGCAACAGGGTGGACGACCTATGGCATATCCTCAACCCTCAATGCCTCCACCGCCTTCCTATAGCCAGATGCCGCCACCTCAATGA 1125 0.5191 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVAVPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSGMPMPPPPQAVSAPPRPLPPPAGMVGQPPVWRPQPPPPQQQGGRPMAYPQPSMPPPPSYSQMPPPQ* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1391 374 MobiDBLite consensus disorder prediction 193 224 - -
Amo19g1391 374 CDD RRM2_SF3B4 111 193 IPR034159 -
Amo19g1391 374 CDD RRM1_SF3B4 28 100 IPR034158 -
Amo19g1391 374 Gene3D - 16 111 IPR012677 -
Amo19g1391 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Amo19g1391 374 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Amo19g1391 374 PRINTS Proline rich extensin signature 212 228 - -
Amo19g1391 374 PRINTS Proline rich extensin signature 259 280 - -
Amo19g1391 374 PRINTS Proline rich extensin signature 282 298 - -
Amo19g1391 374 PRINTS Proline rich extensin signature 303 320 - -
Amo19g1391 374 PRINTS Proline rich extensin signature 325 350 - -
Amo19g1391 374 PANTHER TRANSFORMER-2-RELATED 1 357 - -
Amo19g1391 374 MobiDBLite consensus disorder prediction 289 374 - -
Amo19g1391 374 MobiDBLite consensus disorder prediction 253 273 - -
Amo19g1391 374 MobiDBLite consensus disorder prediction 253 374 - -
Amo19g1391 374 SMART rrm1_1 26 99 IPR000504 GO:0003723
Amo19g1391 374 SMART rrm1_1 113 187 IPR000504 GO:0003723
Amo19g1391 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Amo19g1391 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Amo19g1391 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Amo19g1391 374 Gene3D - 112 200 IPR012677 -
Amo19g1391 374 MobiDBLite consensus disorder prediction 208 224 - -
Amo19g1391 374 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1391 Amo-Chr19 29647341 29653044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1391 18 222 Eukaryotic Initiation Factors Gene Family AT4G34110 26.761 2.54e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1391 K12831 - gmx:100792707 510.375