Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1386 ATGGCCTTTGATGGATGCTGTCCTGACTGTAAACTTCCTGGCGACGACTGCCCACTGATGTGGGGAGCATGCAATCATGCATTTCATTTGCACTGTATTCTAAAATGGGTGAATTCTCAGACATCACAAGCTCATTGTCCCATGTGCCGACGAGAATGGCAGTTTAAAGCGTGA 174 0.4713 MAFDGCCPDCKLPGDDCPLMWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKA* 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1386 57 SUPERFAMILY RING/U-box 2 56 - -
Amo19g1386 57 ProSiteProfiles Zinc finger RING-type profile. 7 50 IPR001841 -
Amo19g1386 57 PANTHER RING BOX 1 57 - -
Amo19g1386 57 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 1 57 - -
Amo19g1386 57 CDD RING-H2_APC11 1 55 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Amo19g1386 57 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 56 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Amo19g1386 57 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1386 Amo-Chr19 29579912 29583892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1386 7 50 C3H Transcription Factor Family AT1G72220 41.304 4.42e-07 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1386 K03358 - twl:119990773 139.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1386 19 29579912 29583892 Amo09g0817 09 13951535 13953883 hybridization