Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1380 ATGGGGATTGAAATCGTGGAGCCTAACACATGCTTCAGGGGTTGCTGTACCAGCGATTCTATTCCTCTGCATCTCCCTCCTTCCTCTTACGCTATACTCTCACCCATTGCACGAGGGGCAGAAAGTATTGTATATGAAGGGAATTTGGATGGCAAGAAGGTTGCTGTGAAGAAACCCATCTTATCAATTTCAGAGGACATTGATAAGTTTCATAAAGAATTGCAACTGCTGTGCACGCTAGATCACCCGGGAATAGCGACATTAATTGCAGCCCATGCAAAACCACCTAATTACCTGTTTTTCTTCGAATTCTATGAATCTTTGAATCTTGCCCAGAAGTTACATGTGGAAGAATGGACCCCAACTATCAATCATGCACTCGTATTAACAATGCAACTAGCAAAGGCGTTGCAATACCTGCATAATCTCGGGGTTCTACATAGAGATATAAAACCAGCGAATATCCTTCTTGACAAAAGTCTTTGTCCACACCTCACAGATTTTGGTTTAGCAGAATACAAGAATAATCTTAAGGGAGTTTCTCTAGAGAACTGGAAGTCTTCTGGAAAACCCACGGGTGGTTTTCACAAAAGAAACATGGTTGGCACACTAATTTATATGGCACCTGAAATATTAAGAAAGGAGTTACATACAGAAAAATCAGATGTATACAGTTTTGGTGTATCAATCAATGAACTCCTAACTGGTGTTGTGCCGTATACTGATCTTCGAGCAGAAGCACAGGCTCACACAGTGCTTGAGATGAACTATACTGAGCAGCAACTGACTGCAGCTGTTAATGATGGATTACGGCCATCCCTTGCTACTGAGGAATTGGGTATACCAGCAAGATTATTATCAATGATACAGAAGTGCTGGGATGCAAATCCCGAAAGCAGACCTTCCTTTGATGATCTTGTTGAGGAACTTGATCTCATTTTGGAAGATAGGAAGATAAAGAAGGCTGAAGATATGCATATTAGACCTTGTCAGTTTCATGCTGATCAACTTGTAGACAAGGTCAATCCTCAGGTTTATCAGGAGTGTTTCAACTGGTCCACTCAAGGCGAAATTTCGGCTCAGCATGCCTCTATTGCAACAGATTTTGGTTTGAGAACCTTGAATGAATCTTATGATGAGCGCATGGTATACCAACCAATACTTTCTTGGGGTTCTTATGCTACATGTGGAAGAAGGGAGACGATGGAGGACACACATTTCATTCTGCCCCATATTTGCAATGTAAAGGATCTCTATGCTTTTGGTATCTTTGATGGCCATAGAGGTGCTGCAGCAGCCGAGTTTTCCTCTAGAGCTGTACCATCATTTTTGCGATCTTTAGTTTTTATGGGCAGTCCTGCTAATGCACTAGCTGAAGCGTTTCTTAGGACAGATTCTGCCTTTAGAAAAGAACTTGATAGCTATCGCAAATCCAACAGATGTGTTCAGAAGGACTGGCATCCTGGTTGTACAGCAATTACTGCACTTGTAGTCAGGAACAAATTATTTGTTTCCAACATAGGTGATTGTAGGGCAATATTATGTCGTGCTGGTAATCCCATTGCTCTAAGTAAGGATCATGTTGCAAGCTGTCTGCAAGAGCGAGAGCGTGTTATTCGTCATGGTGGCCATGTTCATTGGCAAGTTGATACATGGAGGGTTGGTCCTCCTGCGCTTCAGGTTACTCGTTCTATTGGTGATGATGATCTGAAGCCTGCTGTGACTGCAGAACCCGAGATAACTGAGAGCATCTTATCTGTAGAGGATGAGTTTCTGGTCATGGCTAGTGATGGGCTATGGGATGTTTTGAGCGGTGAGGAAGTAATAAAAATAATAAAAGACACTGTAAAAGAGCCTGGAATGTGTTCTAAGAGGTTGGCTACTGAAGCAGTTGAACGTGGCAGCAGAGATAACATTACTGTCATTGTCGTATTTTTACGACCTGTAACTACAGCAGAAAGAATTTATTAG 1971 0.4211 MGIEIVEPNTCFRGCCTSDSIPLHLPPSSYAILSPIARGAESIVYEGNLDGKKVAVKKPILSISEDIDKFHKELQLLCTLDHPGIATLIAAHAKPPNYLFFFEFYESLNLAQKLHVEEWTPTINHALVLTMQLAKALQYLHNLGVLHRDIKPANILLDKSLCPHLTDFGLAEYKNNLKGVSLENWKSSGKPTGGFHKRNMVGTLIYMAPEILRKELHTEKSDVYSFGVSINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVNDGLRPSLATEELGIPARLLSMIQKCWDANPESRPSFDDLVEELDLILEDRKIKKAEDMHIRPCQFHADQLVDKVNPQVYQECFNWSTQGEISAQHASIATDFGLRTLNESYDERMVYQPILSWGSYATCGRRETMEDTHFILPHICNVKDLYAFGIFDGHRGAAAAEFSSRAVPSFLRSLVFMGSPANALAEAFLRTDSAFRKELDSYRKSNRCVQKDWHPGCTAITALVVRNKLFVSNIGDCRAILCRAGNPIALSKDHVASCLQERERVIRHGGHVHWQVDTWRVGPPALQVTRSIGDDDLKPAVTAEPEITESILSVEDEFLVMASDGLWDVLSGEEVIKIIKDTVKEPGMCSKRLATEAVERGSRDNITVIVVFLRPVTTAERIY* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1380 656 SMART PP2C_4 379 644 IPR001932 -
Amo19g1380 656 SUPERFAMILY Protein kinase-like (PK-like) 23 328 IPR011009 -
Amo19g1380 656 SMART PP2C_SIG_2 404 646 IPR001932 -
Amo19g1380 656 PANTHER PROTEIN PHOSPHATASE 2C 1 656 IPR015655 GO:0004722|GO:0006470
Amo19g1380 656 Gene3D Transferase(Phosphotransferase) domain 1 22 340 - -
Amo19g1380 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Amo19g1380 656 ProSiteProfiles PPM-type phosphatase domain profile. 389 646 IPR001932 -
Amo19g1380 656 Gene3D - 379 651 IPR036457 -
Amo19g1380 656 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1380 656 PANTHER - 1 656 - -
Amo19g1380 656 SUPERFAMILY PP2C-like 377 648 IPR036457 -
Amo19g1380 656 Pfam Protein kinase domain 32 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1380 656 Pfam Protein phosphatase 2C 394 639 IPR001932 -
Amo19g1380 656 CDD PP2Cc 391 646 IPR001932 -
Amo19g1380 656 SMART serkin_6 30 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1380 Amo-Chr19 29054252 29064492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1380 99 656 PP2C-type Phosphatase Gene Family AT2G40860 64.528 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Amo19g1380 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1380 - - vun:114166829 1098.19