Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo19g1376 | ATGAGCAGGTGGTCTCAGATTGCAGCACGGTTACCGGGAAGAACCGACAATGAGATAAAGAATCTATGGAACTCTTGCCTCAAGAAGAAGCTGAGGCARAAAGGGATTGACCCAATCACAAACAAGCCACTCTCCGATGTGGTGCCTATTGAGAATAACAAGAACAAGAAGGAGGAGGAGGAGAAGCCACCAACAACAACAGAAAGGTTTGAAGGGCCTCCTTCTGATTCTGTAGGAGGATACTTTTCCTTCAATTATCAGCAAATGATGAACAATTTTGGAGCAACTCCACAAAACGCCACATCTTCCTCCGCCGTCGGATCGAGTGACACTAACTTTGTTGCTAACAACATTCTAACATGGGAACAAGAAGAGGTAAAATGGTGCGAGTATCTTAACACCCTTTTGCTCAACAACACGGTAGTTCAGAATCATTCTTCTTCTTCTTCTCATTCTGTTATGTATGGTGGTGGTGGTGAGGTTATTACTAAGCCAGAAACAACAAGCTTCATGAGACAAGACTCATCAAGTAGTAGTTGGCACCACCATAGCCAGCAACAACCTCATCAATTCTCAGATATGTATACCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGCCAATCCATGTAG | 633 | 0.436 | MSRWSQIAARLPGRTDNEIKNLWNSCLKKKLRQKGIDPITNKPLSDVVPIENNKNKKEEEEKPPTTTERFEGPPSDSVGGYFSFNYQQMMNNFGATPQNATSSSAVGSSDTNFVANNILTWEQEEVKWCEYLNTLLLNNTVVQNHSSSSSHSVMYGGGGEVITKPETTSFMRQDSSSSSWHHHSQQQPHQFSDMYTKDLQRFSVAFGQSM* | 211 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo19g1376 | 210 | Gene3D | - | 1 | 68 | - | - | |
| Amo19g1376 | 210 | SUPERFAMILY | Homeodomain-like | 2 | 36 | IPR009057 | - | |
| Amo19g1376 | 210 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 31 | IPR017930 | - | |
| Amo19g1376 | 210 | PANTHER | HOMEODOMAIN-RELATED | 115 | 203 | - | - | |
| Amo19g1376 | 210 | PANTHER | HOMEODOMAIN-RELATED | 3 | 69 | - | - | |
| Amo19g1376 | 210 | CDD | SANT | 3 | 24 | IPR001005 | - | |
| Amo19g1376 | 210 | MobiDBLite | consensus disorder prediction | 170 | 190 | - | - | |
| Amo19g1376 | 210 | ProSiteProfiles | Myb-like domain profile. | 1 | 27 | IPR001005 | - | |
| Amo19g1376 | 210 | MobiDBLite | consensus disorder prediction | 51 | 67 | - | - | |
| Amo19g1376 | 210 | PANTHER | MYB DOMAIN PROTEIN 55 | 3 | 69 | - | - | |
| Amo19g1376 | 210 | PANTHER | MYB DOMAIN PROTEIN 55 | 115 | 203 | - | - | |
| Amo19g1376 | 210 | MobiDBLite | consensus disorder prediction | 37 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo19g1376 | Amo-Chr19 | 28893913 | 28895613 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo19g1376 | 3 | 207 | MYB Transcription Factor Family | AT1G57560 | 36.652 | 2.21e-23 | 92.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo19g1376 | K09422 | - | psom:113347076 | 97.4413 |