Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1368 ATGGGCCGAATAGTTGGGCCTACTGCAAATTGCAAAATAGTACCCTTGAGCAGAGTGCGCGGGAAGCAGTTACCGTCTCCCTCGCATTTCTTCTTCTTCTGCCGTCTCACTCATCTTTCTCATTTTCTCTGCTCATTCCTAACACAAATTACTCAAACCAAATGGGGTTTAACGAAGCTTTTGGCGGACAATGCACCGAAAGCCATGAAGGAGAATAAATTCGAGAGCTACTTTGGACGCAAGATCGCCATTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAATTGGAACTGAAATGCTCACTAATGAAGCTGGTGAAGTTACTAGTCATTTGCAAGGCATGTTTACGAGGACTATCAGACTTCTCGAATCTGGGATGAAACCAGTATATGTTTTTGATGGGAAACCACCAGAGTTGAAGAAGCAAGAGCTGGCAAAACGTTTGACGAGGAGGGCTGATGCTACCGAGGATTTGTCTGAAGCCAAGGAGACAGCCAATAAGGAAGACATTGAAAAATTCAGCAAACGGACTGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAGCTTTTAAGACTCATGGGAGTGCCCGTTGTTGAGGTTTATGCTGTAGCTTCAGAAGATATGGATTCTTTAACATTTGGAGCTCCCAAATTTCTTCGCCATTTAATGGATCCCAGCTCCAAAAAGATTCCAGTGATGGAATTTGACATTAGCAAGGTTTTGGAGGACCTACAATTGAGCATGGACCAATTTATTGACCTATGCATTCTTTCTGGGTGTGATTATTGTGAAAGCATCCGAGGTATTGGAGGAACAACAGCTTTGAAGCTAATACGTCAACATGGTTCTATTGAGATGATACTGGAGAATATAAACAAAGAAAGGTATCACATTCCAGATGATTGGCCATATCAGGAGGCCCGACGGCTTTTTAAAGAACCATTGGTCATAACTGAAGACGAGCAACTTAATCTGAAGTGGTCTGCTCCAGATGAAGAAGTAATAGCTAGTCTGTTACAAAATCCTTTCAAACAGACACAGATTCACATACTCAAATTAATTCTATCAAAATATATTGAGTTCTTTGGCAATGTAACCAGCTTTGATCATGTTGCCTTGCAGGGGTTAGTAACATTTCTGGTAAATGAGAATGGATTCAACATTGATAGGGTGACAAAGGCAATTGAAAAAATTAAAGCAGCAAAGAACAAGTCGTCACAAGGCCGATTGGAATCATTTTTTAAGCCTACAGCAAATCCATCTGTACCCATTAAACGGAAGTATCCTTTCTGTTTCGCATCTGAGAAATTGAAGTACCAGAAACAGGAGTTTGCCATTTACTAG 1365 0.4125 MGRIVGPTANCKIVPLSRVRGKQLPSPSHFFFFCRLTHLSHFLCSFLTQITQTKWGLTKLLADNAPKAMKENKFESYFGRKIAIDASMSIYQFLIVVGRIGTEMLTNEAGEVTSHLQGMFTRTIRLLESGMKPVYVFDGKPPELKKQELAKRLTRRADATEDLSEAKETANKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDISKVLEDLQLSMDQFIDLCILSGCDYCESIRGIGGTTALKLIRQHGSIEMILENINKERYHIPDDWPYQEARRLFKEPLVITEDEQLNLKWSAPDEEVIASLLQNPFKQTQIHILKLILSKYIEFFGNVTSFDHVALQGLVTFLVNENGFNIDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKYPFCFASEKLKYQKQEFAIY* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1368 454 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 201 221 IPR006084 -
Amo19g1368 454 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 133 152 IPR006084 -
Amo19g1368 454 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 258 273 IPR006084 -
Amo19g1368 454 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 79 93 IPR006084 -
Amo19g1368 454 CDD PIN_FEN1 56 407 - -
Amo19g1368 454 Gene3D - 257 320 - -
Amo19g1368 454 Hamap Flap endonuclease 1 [fen]. 56 422 IPR023426 GO:0016788
Amo19g1368 454 Gene3D - 61 256 - -
Amo19g1368 454 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 56 442 IPR006084 -
Amo19g1368 454 SUPERFAMILY PIN domain-like 56 268 IPR029060 -
Amo19g1368 454 PANTHER FLAP ENDONUCLEASE 1 56 442 - -
Amo19g1368 454 SMART xpgineu 198 253 IPR006086 GO:0004518
Amo19g1368 454 SMART HhH_4 255 288 IPR008918 GO:0003677|GO:0003824
Amo19g1368 454 Pfam XPG I-region 207 268 IPR006086 GO:0004518
Amo19g1368 454 Coils Coil 156 176 - -
Amo19g1368 454 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 253 351 IPR036279 -
Amo19g1368 454 SMART xpgn3 56 159 IPR006085 GO:0004518
Amo19g1368 454 CDD H3TH_FEN1-Euk 256 324 - -
Amo19g1368 454 Pfam XPG N-terminal domain 56 158 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1368 Amo-Chr19 28481920 28487367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1368 56 439 Core DNA Replication Machinery Family AT5G26680 71.820 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1368 K04799 - gmx:100792878 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1368 19 28481920 28487367 Amo19g1368 19 28481920 28487367 ECH
Amo19g1368 19 28481920 28487367 Amo09g0796 09 13431290 13437581 hybridization