Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1359 ATGGTTTCCGTTATTGGCGTTTCTTCAATATACCAAACCCACGCTCTCGAACTCCACAAGAGAGCAACGTCCACAACAACAACAACAGCTTCGGGTTCTTCCAACGCCGTTTCGCTCCCTTCGTTGTCGTTTGACAACAAGTCGCACTTCAACGCCGTTCTCAGAGCTCATTATCACCTTAACGACGGCAATAGGCGCAGGCTCGGTTTTGTTCCTACTTCTAATGCAGTTGTGACAGCTAATGACTCTTCCGTACTCAGCGAAGAAGCCTTCAAGGGTTTTGGTTTTGACGGTGTTGGCGATGATGATGAAATTGGTTATGAGTATGAGAGTGACGGTGACGCTCATTTTATTGCTTCAAGAGAAGATGAGCTCGATATTTCGAAGCTTGGCTTGCCTTCGAGGGTCGTCGACTCGCTCCAGAAACGTGGAATCACTAGCCTTTTCCCAATTCAGAGAGCTGTGTTAGTGCCTGCCTTAGAAGGTAGAGATATCATTGCCCGGGCAAAGACTGGGACAGGGAAGACATTGGCGTTTGGGATTCCCATTATTAAAGGCCTCACTGATGATGAGCAAGGTTCCTTCAGGCGTTCGGGCCGTCTTCCTAAAGTATTGGTCCTTGCACCTACTAGGGAGTTAGCGAAGCAGGTCGAGAAGGAGATAAAAGAATCTGCGCCTTATCTGAATACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAAAGTGCTCTTTCACGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTAATAAATGGGAACAGCCTTAAATTGAGTGAAGTTCAATATTTGGTTCTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGGTCCCATCTGAGCGGCAGACAATGCTTTTCTCTGCGACAATGCCGGGTTGGGTGAAGAAATTATCAAGAAAATATCTGAACAATCCGTTGACAATTGATTTGGTCGGTGATGAAGAAGAAAAGCTTGCTAATGGGATCAAACTTTATGCTATGTCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACTGTCTATGCAAAGGGTGGAAAGACTATTGTTTTCACACAGACAAAAAGGGATGCCGATGAAGTATCACTGTCATTAACAAATAGTATAGCTTCTGAAGCTCTGCATGGTGATATATCTCAGCATCAAAGAGAAAGAACATTGAATGGCTTTCGGCAAGGGAAGTTCACTGTTCTTGTTGCCACGGATGTTGCAGCCCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTACGAACTTCCTAATGACCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAAGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTTGGCTGTAAATTTGAATTTGTTAGTCCACCAGCTATCGGAGAGATTTTGGAGGCATCTGCTGCACAAGTTGTTGCTACGCTTGAGAGAGTTCATCCAGAGTCTGTTGAGTTCTTCACTGCAACTGCACAAAAATTGGTTGAAAAACAAGGGGTTAGTGCCCTCGCAGCTGCACTAGCACAGCTCAGTGGATTCTGTAGACCTCCATCATCCCGTTCATTAATCAACCATGAGCAGGGATGGGTTACATTGCAACTCACTCGAGATGGAGATAATTCTAGAAGATTTCTTTCTGCAAGATCGGTCACTGGGTTTCTTTCTGATGTGTATTCTCCTGCTGCTGATGAAGTTGGAAAAATACATGTAATTGCAGATGACCGGATTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTCAACAAGGATTTGCCACCTGGAAACACTATTTCCAGGATCACCAAGTTACCTGCTTTGCAAGATGATGGACCTGCAAATGATTACTACGGGAAGTTTTCCGACAGAGAACGAAGTAACCGAAGAGGTTCAAGGGATCAGAGAAGTTTTAAAACCTCACGAGGATATGGGGGAAACCGAGGCTCTGACGATGATTTTGGTAGTTCATACGGGAGAGGGAGTAAAAGTTTTAAATCTGGCAACAGCCGGTCTCGAATGGGAAAAAGCAGTGATGACTGGCTGATTGGAGGTAGACAATCAAGCAGGGGTGGTAGCTATGGAGGGGCCTGTTTTAATTGCGGAGAATCGGGGCATCGGGCATCAGATTGTCCCAATAAGCGAAGCTTCTTTTAG 2289 0.4495 MVSVIGVSSIYQTHALELHKRATSTTTTTASGSSNAVSLPSLSFDNKSHFNAVLRAHYHLNDGNRRRLGFVPTSNAVVTANDSSVLSEEAFKGFGFDGVGDDDEIGYEYESDGDAHFIASREDELDISKLGLPSRVVDSLQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTDDEQGSFRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKVPSERQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLANGIKLYAMSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAIGEILEASAAQVVATLERVHPESVEFFTATAQKLVEKQGVSALAAALAQLSGFCRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHVIADDRIQGAVFDLPEDIAKELLNKDLPPGNTISRITKLPALQDDGPANDYYGKFSDRERSNRRGSRDQRSFKTSRGYGGNRGSDDDFGSSYGRGSKSFKSGNSRSRMGKSSDDWLIGGRQSSRGGSYGGACFNCGESGHRASDCPNKRSFF* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1359 762 Gene3D - 349 551 IPR027417 -
Amo19g1359 762 Gene3D - 126 336 IPR027417 -
Amo19g1359 762 Pfam DEAD/DEAH box helicase 149 321 IPR011545 GO:0003676|GO:0005524
Amo19g1359 762 CDD SF2_C_DEAD 358 475 - -
Amo19g1359 762 Gene3D - 729 760 - -
Amo19g1359 762 PANTHER - 41 753 - -
Amo19g1359 762 CDD GUCT_Hera 560 640 - -
Amo19g1359 762 Pfam Zinc knuckle 741 757 IPR001878 GO:0003676|GO:0008270
Amo19g1359 762 SMART ultradead3 144 349 IPR014001 -
Amo19g1359 762 Pfam Helicase conserved C-terminal domain 358 466 IPR001650 -
Amo19g1359 762 Pfam GUCT (NUC152) domain 554 653 IPR012562 GO:0003723|GO:0004386|GO:0005524
Amo19g1359 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 487 IPR027417 -
Amo19g1359 762 MobiDBLite consensus disorder prediction 704 720 - -
Amo19g1359 762 ProSiteProfiles Zinc finger CCHC-type profile. 742 757 IPR001878 GO:0003676|GO:0008270
Amo19g1359 762 CDD DEADc 136 333 - -
Amo19g1359 762 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 41 753 - -
Amo19g1359 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 506 IPR001650 -
Amo19g1359 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Amo19g1359 762 MobiDBLite consensus disorder prediction 661 681 - -
Amo19g1359 762 SUPERFAMILY Retrovirus zinc finger-like domains 729 760 IPR036875 GO:0003676|GO:0008270
Amo19g1359 762 SMART helicmild6 386 466 IPR001650 -
Amo19g1359 762 SMART c2hcfinal6 741 757 IPR001878 GO:0003676|GO:0008270
Amo19g1359 762 MobiDBLite consensus disorder prediction 646 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1359 Amo-Chr19 27815265 27822203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1359 151 488 Eukaryotic Initiation Factors Gene Family AT1G72730 38.150 2.06e-63 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0749 16 11932432 11937696 Amo19g1359 19 27815265 27822203 ECH
Amo19g1359 19 27815265 27822203 Amo19g1359 19 27815265 27822203 ECH
Amo16g0749 16 11932432 11937696 Amo19g1359 19 27815265 27822203 PCT
Amo19g1359 19 27815265 27822203 Amo16g0749 16 11932432 11937696 PCT