Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1351 ATGGAAAAATTAATCTTCAGTGTTGTAATATTGCTTTTGAGTTTATTAACCACACAGCATAAAGTAGTAGCATCCTCATCGTGGCAACAAGCTCATGCAACATTCTATGGTGGAAGTGATGCCTCAGATACAATGGGTGGAGCATGTGGGTATGGAAATCTATACACTGATGGTTATGGAGTTAAAACAGCTGCATTGAGTACTGCTTTGTTCAACGATGGCAAGGCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAACAAAAGTGCCACAATGGTGCCTAAAGGGCACTGCCATCACAATTACTGCCACAAATTTCTGTCCTCCAAACTATGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCAAGGCCCCACTTTGACATGTCTCAACCTGCCTTTGAGAAGATTGCCAAGTACAAGGCTGGAATTGTTCCTATTTTCTACAGAAGAGTTGGGTGCAAAAGAACTGGAGGCATTAGATTCACCATTAATGGAATAGACTACTTTGAGCTAGTGCTAATAAGCAACGTGGGTGGGGCAGGAGATATCTCTAAAGTTTGGATCAAAGGGTCCAAAATGAACAACTGGGAAACCATGTCAAGAAATTGGGGCTCTAACTGGCAAAGCTTGAGCTACCTCAATGGCCAGAGCTTGTCATTCAAAATCCAACTCAGCAATGGAAGGATTCGCACAGCATACAATGTGGCACCATCAAATTGGAACTTTGGCCAGTCTTTCACCAGCAACATTCAGTTCTAA 768 0.4284 MEKLIFSVVILLLSLLTTQHKVVASSSWQQAHATFYGGSDASDTMGGACGYGNLYTDGYGVKTAALSTALFNDGKACGGCYQIVCDATKVPQWCLKGTAITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFEKIAKYKAGIVPIFYRRVGCKRTGGIRFTINGIDYFELVLISNVGGAGDISKVWIKGSKMNNWETMSRNWGSNWQSLSYLNGQSLSFKIQLSNGRIRTAYNVAPSNWNFGQSFTSNIQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1351 255 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Amo19g1351 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Amo19g1351 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Amo19g1351 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Amo19g1351 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Amo19g1351 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Amo19g1351 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Amo19g1351 255 PANTHER EXPANSIN 7 255 - -
Amo19g1351 255 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664
Amo19g1351 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Amo19g1351 255 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Amo19g1351 255 SMART dpbb_1 63 151 IPR007112 -
Amo19g1351 255 Gene3D - 162 255 IPR036749 -
Amo19g1351 255 SUPERFAMILY Barwin-like endoglucanases 27 179 IPR036908 -
Amo19g1351 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Amo19g1351 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Amo19g1351 255 Pfam Lytic transglycolase 63 151 IPR009009 -
Amo19g1351 255 Gene3D - 15 157 IPR036908 -
Amo19g1351 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1351 Amo-Chr19 27521743 27524093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1351 1 255 Expansin Gene Family AT4G01630 74.118 1.40e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1351 - - gmx:100783801 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1351 19 27521743 27524093 Amo19g1351 19 27521743 27524093 ECH
Amo19g1351 19 27521743 27524093 Amo09g0774 09 12979702 12982558 hybridization
Amo16g0756 16 12061548 12069614 Amo19g1351 19 27521743 27524093 PCT
Amo19g1351 19 27521743 27524093 Amo16g0756 16 12061548 12069614 PCT