Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1348 ATGAAGAATGGTAAACAGAGTGAAGAAAGCAAAAGTAATGAGAGAAATGAAGTTAATGATCAAGGAAGGAAGACGAAGATAAACAAGAAAACTAAAGAAGGCACCACATCCAAACTCAAACGAGTAACATTTTCTGATCAGGTGGAGGTCTGTGGTGATGGCTTAATACGGTGGCAAAGGTATACGAATGAAGAAGATGAAAAAATTAAACAGGCTGTTTTCGACTATATAGAGACTCACAAATTGGGGGATGAAGGTCTTGATATGGTTCTTTATAATAAACATCACCCTGAACTTAAAAATTGTTGGAAGGAAATTGGAGTAGCCTTGCCCCATAGGCCTTACATTAGTGTATATTATCGTGCTCACATTTTGTTTACAAGGGATGAGAAACACACTTGGACAGCTGAAGAGGTCGAGTTTTTAAAGAAGACAGTCGAACGACATGGATCTGATTTTAAATCAATAGCCGAGGCAATGGGTAAAAATCGACTTCATGTAAAGGATCAATGGCGTAGAATAAAAATGACCAGAAAGAGAGGAGCATGGTCTCAGGAGGAGTATCAAAAAGTATTTGATTTGGTAAGCGTTGACCTACGTGCAAGGGCTTTAGAAGACACTAGGAATAAAAAGCATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTAGTGACAAATTGGGAACTAGATGGAATGGAGGAATTTGCCAAAAGTGGTATTCTCAACTAACATCTCCTATGGTTGATAAAGGTATTTGGAGTGATACTGATGACTACCGCTTGGTAGATGCCTTATTTAGCTTGGATGCTTGCAGCATGGAGGAGGTAGACTGGGACAATTTGCTTGAGCACAGGGATGGTGAGTTATGCAGAAAACGATGGAATCAAATGGTTCGATATATTGGAGAGCATGGGAGAAAGTCATTCACTGAGCAGGTGGAAATTCTTGCCAAAAGATATTGCCCTGATTTATTGGAAGCAAGAGAAGCCTTTGATAGCCAACCTGTCATTTGTGGACGATCTTGCGAAAAGATATTGCCCTGA 1047 0.3983 MKNGKQSEESKSNERNEVNDQGRKTKINKKTKEGTTSKLKRVTFSDQVEVCGDGLIRWQRYTNEEDEKIKQAVFDYIETHKLGDEGLDMVLYNKHHPELKNCWKEIGVALPHRPYISVYYRAHILFTRDEKHTWTAEEVEFLKKTVERHGSDFKSIAEAMGKNRLHVKDQWRRIKMTRKRGAWSQEEYQKVFDLVSVDLRARALEDTRNKKHGMLRDNIGWEAISDKLGTRWNGGICQKWYSQLTSPMVDKGIWSDTDDYRLVDALFSLDACSMEEVDWDNLLEHRDGELCRKRWNQMVRYIGEHGRKSFTEQVEILAKRYCPDLLEAREAFDSQPVICGRSCEKILP* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1348 348 Pfam Myb-like DNA-binding domain 134 191 - -
Amo19g1348 348 Gene3D - 175 249 - -
Amo19g1348 348 ProSiteProfiles Myb-like domain profile. 175 244 IPR001005 -
Amo19g1348 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 179 IPR017930 -
Amo19g1348 348 SMART sant 57 128 IPR001005 -
Amo19g1348 348 SMART sant 130 177 IPR001005 -
Amo19g1348 348 SMART sant 179 247 IPR001005 -
Amo19g1348 348 SMART sant 250 301 IPR001005 -
Amo19g1348 348 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Amo19g1348 348 MobiDBLite consensus disorder prediction 1 33 - -
Amo19g1348 348 PANTHER GB|AAC33480.1 6 338 - -
Amo19g1348 348 CDD SANT 133 175 IPR001005 -
Amo19g1348 348 Gene3D - 135 174 - -
Amo19g1348 348 ProSiteProfiles Myb-like domain profile. 246 299 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1348 Amo-Chr19 27495755 27501697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1348 128 265 MYB Transcription Factor Family AT4G32730 30.282 7.84e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo19g1348 Myb_DNA-bind_6 4.2e-13 CL0123