Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1336 ATGGCAATGAAGAAGAAGAAGCTGAATTTTTTTGGATTTGCATTTGCATTTGCATGCTTAGTTTGTGGTGTTGTCTCCTATGGATCTGAGCCACTCTCTGTGCTTTCTTTCTTGGAAAACGATGCCGTTTGGGCCAAGCCTTCTTCATTAACAACATACCAACCTCTCATGGTTAATCTCACTCTCATTCATGGAGCTGCTTCTACAGGAGCTGTTTGTTTGGATGGAACATTGCCGGGTTACCACTTGGATCGCGGATTCGGATCTGGTGCGAATAGTTGGCTTGTTCACTTGGAGGGAGGAGGGTGGTGTAATACTGTTAGAAACTGCGTCTACAGAAAAAATACTCGCCGTGGTTCCTCGACATACATGGAAAGTCAAATACAATTCACCGGAATCTTGAGCAATAAGGCAGAAGAAAACCCTGATTTCTTTAACTGGAATAGAGTCAAATTAAGGTACTGTGATGGGGCATCTTTCAGTGGTGATAATGAACTTGAGTCTGAGCAGCTTCAATTCCGAGGACAAAAAATATGGCTAGCAGCAATCGAGGAATTGATGTTCCAAGGAATGCAGACAGCGAACCAGGCACTTCTGTCCGGATGCTCGGCTGGCGGTCTGGCATCTCTAATACATTGCGATGAGTTCCGAAGCTTGTTTCCAGAATCTACCAAGGTTAAATGTTTGAGCGATGCAGGGTTTTTCCTTGATGCAGTTGATGTCTCTGGGAACCGCACACTGAAGAATCTGTTTGAAGGTGTAGTTCAGTTACAGGATGTACAAAAGAACCTGCCCAAAAGTTGCCTTGACCAATTGGATCCAACTTCGTGCTTCTTTCCTCAGAATATGGTCCAACATATTGAGACTCCATTGTTTCTACTCAATGCAGCGTATGATTCGTGGCAGGTCCAAGCCAGTTTAGCCCCACATTCAGCTGACCCGAATGGCTTTTGGAGCGATTGCAAAGCAAACCATGCGAATTGTACCTCGTCTCAGATTCAGTTCCTCCAAGACTTCAGAGATCAATTGCTAAACGACTTGAAAGACTTCGCAAACACACCTCAAACTGGACTATTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACAAGAGACATGGTTTGCTGATAACTCTCCCCTACTTGACAACAAGCCAATTGCAGTTGCTGTCGGAGACTGGTATTTCGACCGAGAAGTAGTTAAAGCCATTGACTGTGCTTATCCCTGTGACAATACTTGCCACAATCTGGTGTTTAAGTGA 1266 0.4431 MAMKKKKLNFFGFAFAFACLVCGVVSYGSEPLSVLSFLENDAVWAKPSSLTTYQPLMVNLTLIHGAASTGAVCLDGTLPGYHLDRGFGSGANSWLVHLEGGGWCNTVRNCVYRKNTRRGSSTYMESQIQFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDNELESEQLQFRGQKIWLAAIEELMFQGMQTANQALLSGCSAGGLASLIHCDEFRSLFPESTKVKCLSDAGFFLDAVDVSGNRTLKNLFEGVVQLQDVQKNLPKSCLDQLDPTSCFFPQNMVQHIETPLFLLNAAYDSWQVQASLAPHSADPNGFWSDCKANHANCTSSQIQFLQDFRDQLLNDLKDFANTPQTGLFINSCFAHCQSERQETWFADNSPLLDNKPIAVAVGDWYFDREVVKAIDCAYPCDNTCHNLVFK* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1336 421 Pfam Pectinacetylesterase 54 401 IPR004963 GO:0016787
Amo19g1336 421 PANTHER NOTUM-RELATED 16 420 IPR004963 GO:0016787
Amo19g1336 421 PANTHER PECTIN ACETYLESTERASE 16 420 - -
Amo19g1336 421 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1336 Amo-Chr19 27271464 27275274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1336 57 421 Carbohydrate Esterase AT1G57590 69.589 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1336 K19882 - gmx:100786972 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1336 19 27271464 27275274 Amo19g1336 19 27271464 27275274 ECH
Amo11g2563 11 133019719 133023349 Amo19g1336 19 27271464 27275274 ECH
Amo19g1336 19 27271464 27275274 Amo09g0757 09 12614418 12618291 hybridization
Amo16g0980 16 15832338 15836849 Amo19g1336 19 27271464 27275274 PCT
Amo06g0055 06 578807 583321 Amo19g1336 19 27271464 27275274 PCT
Amo19g1336 19 27271464 27275274 Amo16g0980 16 15832338 15836849 PCT
Amo19g1336 19 27271464 27275274 Amo06g0055 06 578807 583321 PCT