Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1333 ATGAGAAGGCACTCTTGCTGTTACAATCAGAAGCTTCGAAAGGGTCTGTGGTCACCTGAGGAGGATGAGAAACTTCTCATGCATATTACTAAGTATGGTCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGACTTAGGTGGATAAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCACAAGAAGAAGAGAATCTCATCATTGAGCTTCATGGAGTATTGGGCAATAGATGGTCGCAAATTGCGGCACAATTGCCGGGGAGGACCGACAATGAGATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAGCTGAGGCAGAGAGGTATAGACCCTGTGACACACAAGAAGATTCCGGAGGCCGAGAAAGGCAGCGGCGGCGAGGACAACGACAACAGAAACCAAGAAAAGACAGCAGAAGCATCGTCCAATGAGTTGAACAAATCAGATGATGCAACTCCCTATGTGCAAAACAGAGCATCTTCAATGAGTTGCCATCATCACTCAGATTTCATGGGTGGTTTTCCAATTCAGATGATAAATCATGCATCATCATCATCAGATTCAAATTCAGTTAATTGGTATAGCCACAGTAGTGGAAGGTCTTTTGATATCAACACTGATTTTCCATTCAATACCACTTCTATTCTTACACCAACAACCGCAACCAATTTATTTCTTCCTACTGATTCTAAGTTTTTGAAGAAGTTAAAAAATGTGACTTCTCCTATTTTCAAAAGTTATTTTATCACTCTTATTTAA 795 0.4113 MRRHSCCYNQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHGVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKKIPEAEKGSGGEDNDNRNQEKTAEASSNELNKSDDATPYVQNRASSMSCHHHSDFMGGFPIQMINHASSSSDSNSVNWYSHSSGRSFDINTDFPFNTTSILTPTTATNLFLPTDSKFLKKLKNVTSPIFKSYFITLI* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1333 264 MobiDBLite consensus disorder prediction 122 149 - -
Amo19g1333 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo19g1333 264 Gene3D - 69 161 - -
Amo19g1333 264 PANTHER MYB DOMAIN PROTEIN 55 1 235 - -
Amo19g1333 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo19g1333 264 CDD SANT 17 61 IPR001005 -
Amo19g1333 264 Gene3D - 14 66 - -
Amo19g1333 264 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Amo19g1333 264 SMART sant 66 114 IPR001005 -
Amo19g1333 264 SMART sant 13 63 IPR001005 -
Amo19g1333 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo19g1333 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo19g1333 264 PANTHER MYB DOMAIN PROTEIN 55 1 235 - -
Amo19g1333 264 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo19g1333 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo19g1333 264 MobiDBLite consensus disorder prediction 122 163 - -
Amo19g1333 264 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1333 Amo-Chr19 27103336 27105968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1333 1 152 MYB Transcription Factor Family AT4G01680 82.237 1.30e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo19g1333 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1333 K09422 - gmx:100782199 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1333 19 27103336 27105968 Amo19g1333 19 27103336 27105968 ECH
Amo19g1333 19 27103336 27105968 Amo09g0755 09 12528758 12530294 hybridization
Amo16g0977 16 15778066 15780058 Amo19g1333 19 27103336 27105968 PCT
Amo06g0060 06 627747 629385 Amo19g1333 19 27103336 27105968 PCT
Amo19g1333 19 27103336 27105968 Amo16g0977 16 15778066 15780058 PCT
Amo19g1333 19 27103336 27105968 Amo06g0060 06 627747 629385 PCT