Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1323 ATGAATTTTTCCACTTTTTTAAGACCTTCAATGCTTCGTCAGAATAGTTCTGTTTCACGTGATGCTGATAACAACAAAGAAGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGCAATAATAATAAGAGGAAAGTGGTGGATACCGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAACACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTCAAGCGAGAATGATGAAGACATAGAAGATGTTACGAAGGATATTAAGAATGCTCGGCGGGAGGGCAATAATGGAGTCAGAAGAAGCAGGAATGCTGAGACTCATAATTTATATGAAAGGCAGCGAAGAGACAAGATCAACAAGAAACTGCGCGTACTGAAAGATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAGTTAATGGGTATGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATGGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTTATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAAGGTTAATAATCTTTGTACACAACCGCCACTACTTCAGACAACCAATAATATCTCAGCTCTAAAGTAG 852 0.4038 MNFSTFLRPSMLRQNSSVSRDADNNKEEPFPEKQLKSVSNNNKRKVVDTGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYSSENDEDIEDVTKDIKNARREGNNGVRRSRNAETHNLYERQRRDKINKKLRVLKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQLMGMRPGINIPCNMAQFNGIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTTHPMLGNNNNKVNNLCTQPPLLQTTNNISALK* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1323 283 Coils Coil 87 107 - -
Amo19g1323 283 MobiDBLite consensus disorder prediction 1 19 - -
Amo19g1323 283 MobiDBLite consensus disorder prediction 1 41 - -
Amo19g1323 283 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
Amo19g1323 283 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 37 267 - -
Amo19g1323 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Amo19g1323 283 PANTHER TRANSCRIPTION FACTOR PIF3 37 267 IPR044273 GO:0003700|GO:0006355
Amo19g1323 283 SMART finulus 122 171 IPR011598 GO:0046983
Amo19g1323 283 CDD bHLH_AtPIF_like 116 178 - -
Amo19g1323 283 Gene3D - 107 166 IPR036638 GO:0046983
Amo19g1323 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1323 Amo-Chr19 26744929 26747795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1323 82 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 45.695 1.05e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g1323 HLH 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1323 K12126 - gmx:100818543 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0062 06 674831 677111 Amo19g1323 19 26744929 26747795 PCT
Amo19g1323 19 26744929 26747795 Amo06g0062 06 674831 677111 PCT