Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1316 ATGGATGAAGAAGCCTATTCCTCTTCCTCTTCCTCTTCACCTGTCAACCCTTCTTTCTCAATTGCTTCTTCAAAAAGTGACAAATTCTATGTGAAAGTGTACATGGAAGGCAATCCAATTGGCAGAAAACTCAATCTTTTAGCTCATGATAGCTACCGAGGATTGGTTAAGGCTCTTGAACATATGTTTAAAACTACCATACTCTTGGCAACTGAGTTAGATGCAGTACAAGCAGAGAGGTGCCATGTGCTAACTTATGAGGATGGAGAACGGGATTTGATTATGGTTAGAAATGTGTCTTGGGAGTAA 309 0.4013 MDEEAYSSSSSSSPVNPSFSIASSKSDKFYVKVYMEGNPIGRKLNLLAHDSYRGLVKALEHMFKTTILLATELDAVQAERCHVLTYEDGERDLIMVRNVSWE* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1316 102 PANTHER AUXIN-INDUCED PROTEIN 7 102 - -
Amo19g1316 102 MobiDBLite consensus disorder prediction 1 21 - -
Amo19g1316 102 Pfam AUX/IAA family 22 102 IPR033389 -
Amo19g1316 102 SUPERFAMILY CAD & PB1 domains 21 97 - -
Amo19g1316 102 Gene3D - 22 102 - -
Amo19g1316 102 ProSiteProfiles PB1 domain profile. 28 102 IPR000270 GO:0005515
Amo19g1316 102 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 102 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1316 Amo-Chr19 26604465 26604870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1316 22 101 B3 DNA Binding Superfamily AT1G59750 30.000 3.72e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo19g1316 AUX_IAA 5.6e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1316 K14484 - gmx:100781660 119.012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0066 06 710542 711389 Amo19g1316 19 26604465 26604870 PCT
Amo19g1316 19 26604465 26604870 Amo06g0066 06 710542 711389 PCT