Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1297 ATGGTTAATTCAAGCTCAGATTGTCAGGTGAATGAGGGCAAATTAGATTTTGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTGTGTTGTTGATGACCAGTTTGTTCCGAAGGTTAGAATGACTTTTACCACCCTTGAAGATGCTGGAAAATTTTACAAGGACTACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACTGAGAAGACAAATCCCACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAAGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCTTACTGTCTAAGTAAAGTAGAGATGCTCAAACAGCATAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGACCGTCATGTATGGGTTCCAATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCTGGAACACCTCGCTTATTCAATTTTTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCACAATTTAGAGGAAAGGCGAATTGCATCACTAAATTAACAAATTCTGCTCTAGGCTATTCAGTATACGAAGTTGGAGAACAAATTTTCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTAGCAGCCGAGGTAAAATGTCAATGCTTATTATTCGAGTCAAGAGGCATATTGTGCCGTCATGCACTAAGCGTGTTAAGCTTTGAACGAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGTGA 1056 0.4081 MVNSSSDCQVNEGKLDFEFESNEVPEPLCVVDDQFVPKVRMTFTTLEDAGKFYKDYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPYCLSKVEMLKQHRELSMSIRRTIENNEEADRHVWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITWNTSLIQFFKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITKLTNSALGYSVYEVGEQIFSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFERVSQVSPRYILERWSKKVKR* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1297 351 PANTHER OS03G0843700 PROTEIN 26 146 - -
Amo19g1297 351 PANTHER OS03G0843700 PROTEIN 164 351 - -
Amo19g1297 351 Pfam SWIM zinc finger 298 329 IPR007527 GO:0008270
Amo19g1297 351 ProSiteProfiles Zinc finger SWIM-type profile. 296 332 IPR007527 GO:0008270
Amo19g1297 351 Pfam FAR1 DNA-binding domain 51 134 IPR004330 -
Amo19g1297 351 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 146 IPR031052 GO:0006355
Amo19g1297 351 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 164 351 IPR031052 GO:0006355
Amo19g1297 351 SMART 26again6 307 334 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1297 Amo-Chr19 26137110 26139455 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g1297 FAR1 5.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1297 - - adu:110280503 353.214