Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1295 ATGGGTGGAGAGAATAGTGTAGATGGAAAAGAGAAGAGTAAAAGTGATGATGAGGCAACCACATCAGAGAATCAGGGAGAAGCCAAAACCGTGAACGGTGAAAAAGAAGATCAGAAGGTAAAGAAAAATGAGAAGCAGGAAACGGTGCCGTTTCACAAGCTGTTTTACTTTGCAGACTCCACAGACATTCTTTTGATGGTAGCTGGGACCATTGGTGCCATTGGAAATGGCATGGGTTTGCCTCTCATGACGCTCCTCTTTGGTCAAATGATTAATAGCTTCGGTGCTAACCAGCAAAACTCAAACGTGGTGGATGAAGTTTCCAAGGTTGCTTTAAAATTTGTGTACTTGGCAATTGGAAGTGGGGTGTCAGCGTTCCTCCAGGTTAGTTGCTGGATGGTCACAGGAGAGAGACAAGCAGCAAGAATCAGGGGATTGTATTTGAAGACTATACTGAGACAAGATGTTGCTTTCTTTGATAGAGAAACAAACACTGGTGAGGTGGTTGGGAGGATGTCCGGTGACACAGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAGTTTATTCAGCTAGTAGCAACATTTATTGGTGGATATGTGGTTGCATTTATCAAAGGGTGGCTTCTTACTGTTGTGATGTTGTCCACTCTTCCACTTCTTGTTGTGGCTGGTGCTGCCATGGCCATAGGCATAAGCAAGATGGCTTCCATGGGTCAAGCTGCATATGCAAAAGCTGCACATGTTGTTGAACAAACTATTGGCTCAATAAGAACTGTTGCATCTTTTACAGGGGAAAAACAAGCAGTATCTGATTATGACAAGCATCTTGTGGAAGCCTACAAATCAGGACTACAAGAAGGTTCCATGGAAGGGTTTGGTCTAGGCACAATGATGCTTTTTATCTTCTGTGGCTATTCTCTGGCTGTATGGTTTGGCGCAAAGATGGTAATGGAAAAGGGATATAACGGCGGCACGGTGATTAATGTCATTGTTGCCGTGTTAACTGCTTCCATGTCTCTTGGTCAGGCATCTCCTAGCTTGAGCGCTTTCGCGGCAGGTCAGGCTGCGGCATACAAAATGTTTCAGACAATTGAGAGGAAGCCGGAGATAGATTCGTATGATCCGAGTGGAAAGACATTGGAGGATATCCAAGGTGACATTGTGTTAAGAGATGTTTGTTTCAGTTATCCATCAAGACCTGAGGAATTGATATTCAATGGACTCTCCCTTCATATACCGAGTGGCACCACTGCGCTTTAG 1266 0.4447 MGGENSVDGKEKSKSDDEATTSENQGEAKTVNGEKEDQKVKKNEKQETVPFHKLFYFADSTDILLMVAGTIGAIGNGMGLPLMTLLFGQMINSFGANQQNSNVVDEVSKVALKFVYLAIGSGVSAFLQVSCWMVTGERQAARIRGLYLKTILRQDVAFFDRETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVATFIGGYVVAFIKGWLLTVVMLSTLPLLVVAGAAMAIGISKMASMGQAAYAKAAHVVEQTIGSIRTVASFTGEKQAVSDYDKHLVEAYKSGLQEGSMEGFGLGTMMLFIFCGYSLAVWFGAKMVMEKGYNGGTVINVIVAVLTASMSLGQASPSLSAFAAGQAAAYKMFQTIERKPEIDSYDPSGKTLEDIQGDIVLRDVCFSYPSRPEELIFNGLSLHIPSGTTAL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1295 421 Gene3D ABC transporter type 1, transmembrane domain 53 378 IPR036640 GO:0005524|GO:0016021
Amo19g1295 421 SUPERFAMILY ABC transporter transmembrane region 52 373 IPR036640 GO:0005524|GO:0016021
Amo19g1295 421 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 18 420 - -
Amo19g1295 421 PANTHER - 18 420 - -
Amo19g1295 421 CDD ABC_6TM_Pgp_ABCB1_D1_like 66 350 - -
Amo19g1295 421 MobiDBLite consensus disorder prediction 1 44 - -
Amo19g1295 421 Gene3D - 379 419 IPR027417 -
Amo19g1295 421 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 67 354 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g1295 421 Pfam ABC transporter transmembrane region 67 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1295 Amo-Chr19 26130809 26132815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1295 40 419 Calmodulin-binding Proteins AT2G36910 39.687 1.90e-87 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1295 K05658 - gmx:100777909 656.366