Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1285 ATGGCAAACGGCAAAGTCATTGTCGCTGGAGTATCTATCATTCTTGTTGTTGGTGTTGTCATTGGCACCGTTGCCGTTGTTAGCAACAACAACAGCAACGACCAATTGAAAACCCACAATAAGGCAGTTGACTCATTGTGCCAAAACGCAGATGACAAGAAACTTTGTTATGATGTCATTGGCAATGTCAACACCACAGACCCAAAGGATTACGTCTCAGAGGTGGTAAGGAAAACCTTGGACAGTGTCATCAAGGCATTCAACATGACTGATACCCTTTCCGTGGAGCACGGTCAGAGTAATCCAGGCATGAAGATGGCCCTTGAAGATTGCAAGGACTTGTTGCAATCAGCAATGCACGAACTGGAGGCCTCTATCAACCTTGTCACTGAGAACAACTTTGCAAGTGTTTACCAGAGTTCTGCAGAACTCAAAAACTGGTTGGGTGCCGTCATTGCCTACCAACAATCTTGCATGGACGGCTTTGACACCGAAGGTGAAAAGAAGGTCCAAACCGAGTTGCAATCTGACAGCTTGGACAGTGTTGGCAAACTCACTGGTCTTGCTCTTGATGTTGTTTCCGGATTGTCCCACTTCCTTAATGGTCTTGGTTTGAACTTGAACCTCAAACCCGCTTCTAGGAAGCTCCTTGAGGTGGATCATGAGGGATTCCCCACTTGGTTATCCGCCGCAGATCGCAAACTCTTGGCTAACATCGATAATGTCAAACCTAATGTTGTTGTTGCCAAGGATGGCAGTGGCCAATTTAAGACCGTCTTGGACGCAATTAACTCCTACCCCGCCAACTTCCAAGGTAGATACATTATCTATGTTAAGGCTGGCGTTTATGACGAATACATTACCGTTGACAAGAGGTGCAAGAACTTGCTTATCTATGGTGATGGAAATACAAGAACCATTATCACTGGTCGCAAGAACTTCCATGAGGGTACCAAGACAATGAGAACCGCCACATTCTCTTCCAATGCCGATGATTTCATTGCCAAGTCAATTGCATTCGAGAATACCGCTGGTGCTGAAGGTCACCAGGCAGTGGCACTCCGTGTGCAGGGAGATCGCTCAGCCTTCTTTGATTGCGCAATGCGTGGTTACCAAGATACACTTTATGCCCACGCTCACCGTCAGTTCTACCGCAACTGCGAAATATCTGGTACCATTGACTTCATCTTCGGCTATGGTACCACCTTGATCCAAAACTCTAGGATCATTGTGAGGAAGCCCATGTCAAACCAGCAGAACATCGTGGTCGCCGATGGAACTGACCAGAAGAACATGCCTACTGGTATTGTCCTCCAAAATTGTGAGATCATGGCTGATGCCGCCCTCTACCCAGACAGGTTGACAGTGAGGACATTCTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAATAACATTGGTGACTTGATCCAGCCACAAGGTTATATCCCATGGAACCCACCAACTGAGGCTAACACTGACAATTGTTACTTTGCTGAGTTTGGAAACACTGGAGCTGGTGCCAACGCCGGAGCCAGGGCCAAATTTGCAAAAGGACTTATTAACAAGAATACTGCTGCTAAATATCTTGCTGAGCCATGGATTCAAGCTAGCACCTGGGTCCCAGCCACTGGCATTTCCTACGATGCTGGCTTCATCAAGGCTTAA 1680 0.4708 MANGKVIVAGVSIILVVGVVIGTVAVVSNNNSNDQLKTHNKAVDSLCQNADDKKLCYDVIGNVNTTDPKDYVSEVVRKTLDSVIKAFNMTDTLSVEHGQSNPGMKMALEDCKDLLQSAMHELEASINLVTENNFASVYQSSAELKNWLGAVIAYQQSCMDGFDTEGEKKVQTELQSDSLDSVGKLTGLALDVVSGLSHFLNGLGLNLNLKPASRKLLEVDHEGFPTWLSAADRKLLANIDNVKPNVVVAKDGSGQFKTVLDAINSYPANFQGRYIIYVKAGVYDEYITVDKRCKNLLIYGDGNTRTIITGRKNFHEGTKTMRTATFSSNADDFIAKSIAFENTAGAEGHQAVALRVQGDRSAFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYGTTLIQNSRIIVRKPMSNQQNIVVADGTDQKNMPTGIVLQNCEIMADAALYPDRLTVRTFLARPWKAFSRAVFIENNIGDLIQPQGYIPWNPPTEANTDNCYFAEFGNTGAGANAGARAKFAKGLINKNTAAKYLAEPWIQASTWVPATGISYDAGFIKA* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1285 559 PANTHER PECTINESTERASE 5 556 - -
Amo19g1285 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 197 IPR035513 -
Amo19g1285 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 194 IPR035513 -
Amo19g1285 559 Pfam Pectinesterase 245 541 IPR000070 GO:0030599|GO:0042545
Amo19g1285 559 PANTHER PECTINESTERASE 5 556 - -
Amo19g1285 559 Gene3D - 239 556 IPR012334 -
Amo19g1285 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 172 IPR006501 GO:0004857
Amo19g1285 559 SMART PMEI_2 38 192 IPR006501 GO:0004857
Amo19g1285 559 CDD PMEI-like_3 45 197 - -
Amo19g1285 559 SUPERFAMILY Pectin lyase-like 243 554 IPR011050 -
Amo19g1285 559 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Amo19g1285 559 Pfam Plant invertase/pectin methylesterase inhibitor 42 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1285 Amo-Chr19 25775655 25777788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1285 5 556 Carbohydrate Esterase AT5G49180 37.279 3.48e-127 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1285 K01051 - gmx:100808559 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1285 19 25775655 25777788 Amo19g1284 19 25735046 25737193 ECH
Amo19g1285 19 25775655 25777788 Amo19g1285 19 25775655 25777788 ECH