Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1284 ATGGCAAACGGCAAAGTCGTTGTTTCTGCCGTTTCTATCATCCTTGTGGTTGGTGTTGTCATTGGCACCGTTGCAGTTGTTAGCAACAACAACAGCAGCCATGACCAATTGAAATCCCACAACAAGGCAGTGGAGAAGTTGTGCCAAAACGCAGATGACAAGAAACTTTGCTATGACGTCATTGGCAACGTCAATACCACTGACCCAAAGGATTACGTCTCAGAAGTGGTGAAGAGAACATTGGATACCGTCATCAAGGCATTCAACATGACCGATAGCCTCTCTGTGGAGCATGGCGAGAGTAATCCTGGCATGAAGATGGCCCTTGATGATTGCAAGGATTTGCTACAATCAGCAACCCACGAACTCGAAGCCTCTATCAACCTTATCACTGACAACAATTTTGCAAATGTTTACCAGAGTTCCGCTGAACTCAAGAACTGGTTGGGTGCCGTTATTGCCTACCAGCAATCTTGCATGGACGGCTTTGACACCGACGGTGAAAAGAAAGTCAAAACCGAGTTGCAAGCTGATAGCTTGGATAGCGTTGGCCAGCTCACTGCACTTGCTCTTGATGTTGTTTCCGGATTGTCCCACTTCCTTAATGGTCTTGGTTTGAACTTGAACCTCAAACCTGCTTCTAGAAAGCTCCTTGAGGTGGATCATGAGGGATACCCCACTTGGTTATCTGCCGCAGATCGTAAACTCTTGCAAGACATCAATAATGTCAGACCTAATGTTGTTGTTGCCAAGGACGGTAGTGGCCAATTCAAGACCGTTTTGGAGGCTATTAACTCTTACCCTAAGAACTACACAGGTAGATACATTATCTACGTTAAGGCTGGCGTTTATGATGAATACATTACCGTTGACAAGAAGTTCAAGAACTTGTTCATCTATGGCGATGGAAATACAAAGACCATCATCACCGGTCGCAAGAACTTCCATGAGGGTACTAAGACCATGAGAACATCCACATTCTCCACCAATGCTGATGATTTCATTGCCAAGTCAATTGCATTCGAGAATACCGCTGGTGCTGAAGGTCACCAGGCAGTGGCACTCCGCGTGCAGGGAGATCGCTCAGCCTTCTTTGATTGCGCAATGCGTGGTTACCAAGATACACTTTATGCCCACGCCCATCGTCAGTTCTACCGCAACTGCGAAATCTCTGGTACCATCGACTTCATCTTCGGCTATGGCACCACCTTGATCCAAAACTCTAGGATCATTGTGAGGAAGCCCATGTCAAACCAGCAGAACATTGTGGTCGCTGATGGAACTGACCAGAAGAACATGCCTACTGGTATTGTCCTCCAAAATTGTGAGATCATGGCTGATTCCACCCTCTACCCAGACAGGTTGACAGTGAGGACATTCTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAATACCATTGGTGATTTGATCCAGCCACAAGGTTACATCCCATGGAACCCACCAACTGAGGCTAACACTGACAATTGTTACTTTGTTGAGTATGGAAACACTGGAGCTGGTGCCAATGCCGGAGCCAGGGCCCCATTTGCAAAAGGCATTATTAGTAAGGATGAAGCTTCTCAATTTCTTGCTGAGCCATGGATCCAAGCTAGCACTTGGGTCCCAGCCACTGGCATTTCATTCGATGCTGGTTTCACCAAGGCTTAA 1683 0.4688 MANGKVVVSAVSIILVVGVVIGTVAVVSNNNSSHDQLKSHNKAVEKLCQNADDKKLCYDVIGNVNTTDPKDYVSEVVKRTLDTVIKAFNMTDSLSVEHGESNPGMKMALDDCKDLLQSATHELEASINLITDNNFANVYQSSAELKNWLGAVIAYQQSCMDGFDTDGEKKVKTELQADSLDSVGQLTALALDVVSGLSHFLNGLGLNLNLKPASRKLLEVDHEGYPTWLSAADRKLLQDINNVRPNVVVAKDGSGQFKTVLEAINSYPKNYTGRYIIYVKAGVYDEYITVDKKFKNLFIYGDGNTKTIITGRKNFHEGTKTMRTSTFSTNADDFIAKSIAFENTAGAEGHQAVALRVQGDRSAFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYGTTLIQNSRIIVRKPMSNQQNIVVADGTDQKNMPTGIVLQNCEIMADSTLYPDRLTVRTFLARPWKAFSRAVFIENTIGDLIQPQGYIPWNPPTEANTDNCYFVEYGNTGAGANAGARAPFAKGIISKDEASQFLAEPWIQASTWVPATGISFDAGFTKA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1284 560 Gene3D - 240 557 IPR012334 -
Amo19g1284 560 Pfam Pectinesterase 246 542 IPR000070 GO:0030599|GO:0042545
Amo19g1284 560 Pfam Plant invertase/pectin methylesterase inhibitor 43 192 IPR006501 GO:0004857
Amo19g1284 560 SMART PMEI_2 39 193 IPR006501 GO:0004857
Amo19g1284 560 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Amo19g1284 560 CDD PMEI-like_3 47 198 - -
Amo19g1284 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
Amo19g1284 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
Amo19g1284 560 SUPERFAMILY Pectin lyase-like 244 555 IPR011050 -
Amo19g1284 560 PANTHER PECTINESTERASE 5 557 - -
Amo19g1284 560 PANTHER PECTINESTERASE 5 557 - -
Amo19g1284 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1284 Amo-Chr19 25735046 25737193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1284 4 557 Carbohydrate Esterase AT2G47030 39.496 4.70e-133 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1284 K01051 - gmx:100808559 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0455 16 7316936 7321786 Amo19g1284 19 25735046 25737193 ECH
Amo19g1285 19 25775655 25777788 Amo19g1284 19 25735046 25737193 ECH
Amo19g1284 19 25735046 25737193 Amo19g1284 19 25735046 25737193 ECH