Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1283 ATGGCAAACGGCAAAGTCGTTGTTTCTGCAGTTTCTATCATCCTTGTAGTTGGTGTTGTCATTGGCACCGTTGCAGTTGTTAGCAACAACAACAGCAGCCATGACCAATTGAAATCCCACAACAAGGCAGTGGAGAAGTTGTGCCAAAACGCAGATGACAAGAAACTTTGCTATGACGTCATTGGCAACGTCAATACCACTGACCCAAAGGATTACGTCTCAGAAGTGGTGAAGAGAACATTGGATACCGTCATCAAGGCATTCAACATGACCGATAGCCTCTCTGTGGAGCATGGCGAGAGTAATCCTGGCATGAAGATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCAGCAACCCACGAACTCGAGGCCTCTATCAACCTTATCACTGACAACAATTTCGCAAATGTTTACCAGAGTTCCGCTGAACTCAAGAATTGGTTGGGTGCCGTTATTGCCTACCAGCAATCCTGCATGGACGGCTTTGACACCGACGGTGAAAAGAAAGTCAAAACCGAGTTGCAATCTGACAGCTTGGATAGCGTTGGCCAGCTCACTGCGCTTGCTCTTGATGTTGTTTCCGGATTGTCCCACTTCCTTAATGGTCTTGGTTTGAACTTGAACCTCAAACCTGCTTCTAGAAAGCTCCTTGAGGTGGATCATGAGGGATACCCCACTTGGTTATCCGCCGCAGATCGTAAACTCTTGCAAGACGTCAATAATGTCAGACCTAATGTTGTTGTTGCCAAGGACGGTAGTGGCCAATTTAAGACCGTTTTGGAGGCTATTAACTCTTACCCTAAGAACTACACAGGTAGATACATTATCTACGTTAAGGCTGGCGTTTATGATGAATACATTACCGTTGACAAGAAGTTCAAGAACTTGTTTATCTATGGCGATGGAAATACAAAGACCATCATCACTGGTCGCAAGAACTTCCATGAGGGTACTAAGACCATGAGAACATCCACATTCTCCACCAATGCTGATGATTTCATTGCCAAGTCAATTGCATTCGAGAATACCGCTGGTGCTGAAGGTCACCAAGCAGTGGCACTCCGCGTGCAGGGAGATCGCTCAGCCTTCTTTGATTGCGCAATGCGTGGTTACCAAGATACACTTTATGCCCACGCCCATCGTCAGTTCTACCGCAACTGCGAAATCTCTGGTACCATTGACTTCATCTTCGGCTATGGCACCACCTTGATCCAAAACTCTAGGATCATTGTGAGGAAGCCCATGTCAAACCAGCAGAACATTGTGGTCGCTGATGGAACTGACCAGAAGAACATGCCTACTGGTATTGTCCTCCAAAATTGTGAGATCATGGCTGATTCCACCCTCTACCCAGACAGGTTGACAGTGAGGACATTCTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAATACCATTGGTGATTTGATCCAGCCACAAGGTTACATCCCATGGAACCCACCAACTGAGGCTAACACTGACAATTGTTACTTTGTTGAGTATGGAAACACTGGAGCTGGTGCCAATGCCGGAGCCAGGGCCCCATTTGCAAAAGGCATTATTAGTAAGGATGAGGCTTCTCAATTTCTTGCTGAGCGATGGATCCAAGCTAGCACTTGGGTCCCTGCCACTGGCATTACATACGATGCTGGCTTCACCAAGGCTTAA 1683 0.4694 MANGKVVVSAVSIILVVGVVIGTVAVVSNNNSSHDQLKSHNKAVEKLCQNADDKKLCYDVIGNVNTTDPKDYVSEVVKRTLDTVIKAFNMTDSLSVEHGESNPGMKMALDDCKDLLQSATHELEASINLITDNNFANVYQSSAELKNWLGAVIAYQQSCMDGFDTDGEKKVKTELQSDSLDSVGQLTALALDVVSGLSHFLNGLGLNLNLKPASRKLLEVDHEGYPTWLSAADRKLLQDVNNVRPNVVVAKDGSGQFKTVLEAINSYPKNYTGRYIIYVKAGVYDEYITVDKKFKNLFIYGDGNTKTIITGRKNFHEGTKTMRTSTFSTNADDFIAKSIAFENTAGAEGHQAVALRVQGDRSAFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYGTTLIQNSRIIVRKPMSNQQNIVVADGTDQKNMPTGIVLQNCEIMADSTLYPDRLTVRTFLARPWKAFSRAVFIENTIGDLIQPQGYIPWNPPTEANTDNCYFVEYGNTGAGANAGARAPFAKGIISKDEASQFLAERWIQASTWVPATGITYDAGFTKA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1283 560 Pfam Plant invertase/pectin methylesterase inhibitor 43 192 IPR006501 GO:0004857
Amo19g1283 560 SUPERFAMILY Pectin lyase-like 244 555 IPR011050 -
Amo19g1283 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 179 IPR006501 GO:0004857
Amo19g1283 560 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Amo19g1283 560 PANTHER PECTINESTERASE 5 557 - -
Amo19g1283 560 SMART PMEI_2 39 193 IPR006501 GO:0004857
Amo19g1283 560 CDD PMEI-like_3 47 198 - -
Amo19g1283 560 Gene3D - 240 557 IPR012334 -
Amo19g1283 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
Amo19g1283 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
Amo19g1283 560 PANTHER PECTINESTERASE 5 557 - -
Amo19g1283 560 Pfam Pectinesterase 246 542 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1283 Amo-Chr19 25701509 25703702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1283 4 557 Carbohydrate Esterase AT2G47030 39.328 9.27e-133 397