Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1282 ATGGAAAAGACAAAGGTTGCTTCTGCAGTTTCTCTCCTTCTAGTGGTGGGTGTTGCAGTGGGTGTTGTTGCCATTGTCCGCACCAACGACGAGAAAGTCACCGGCACAACCGGTAACGACGGCGGATTAATAAGCACCCATAGCAAGGCCGTTAAGGCCATGTGCCAAAACTCCGACGACCGAAGACTATGCCTAGACACACTGAATCCTGTAAACCACACGGATCCAAAAGAGTACATATCAACGGTTGTAAAGAGATCGTTGGAAAGCGTCATCAAGGCCTTTAACATGAGCGATACGCTCAGATTGGAGCACGGTAACAGCACCCCGGGGGTCAAAATGGCCCTCGAGGACTGTAGAGACCTGCTCCAATTCGCCATTGGGGAGTTACAAGCAACAAAAACAGTCCTTCAGGACAACACAATAAATCATGTGCATGATCGCGTCGCCGAGCTCAAGAATTGGTTAGGGGCTGTTTTCGCCTTCCAACAATCGTGCCTGGACGGGTTCCACACCCACCGCGAGAAGCAGGTTCGGTCGCAGTTGCAAACCGGAAGCTTGGATCACGTTGGGAAGGTTACGGCGTTGGCTCTTGACGTTGTGTCTCGGATTGCACATGTGCTGTCAAATTTTGACTTACACCTTATCGTTAAGCCTTCTTCACGGCGTTTAATTGAGGTTGATCAAGATGGTTACCCGGCTTGGTTCGGCGTTACGGATCGGAAGCTCTTGGGTGACGTCAGCAAGGGAGGTTCCATTGCGCCCAATGCAGTTGTTGCTAAAGATGGGAGCGGGCAATTTAAGACTGTTTTGGATGCCATTAATGCGTACCCTAAAAACAATAAGGGGAGATATGTTATCTATGTTAAGGCTGGCATATATGATGAGTATATTACTGTGGATAAGAACAAGAAAAATATTTTGATGTATGGAGATGGCCACACCAAAACTATTATTACTGGTAATAAAAATTTTGTTGATGGCTGGAAGACAATGAGAACTGCTACCTTTGCGACAGTTGCTGAAGATTTCATTGCGAAGTCAATTGCATTCGAGAACACAGCCGGTGCAAGCAAACATCAAGCAGTGGCACTTCGCGTGCAAGGCGACCGCTCAGCTTTCTTCGACTGCGCCATTCGTGGCTTCCAGGACACGCTATATGCTCACGCCCACCGCCAGTTCTATCGCAACTGTGAAATCTCCGGCACCGTCGACTTCATCTTCGGTTACTCCTCAACCATAGTCCAAAGCTCCAAGATCATCGTCCGAAAACCCGACCCAAACCAACAAAACATCGTGGTTGCAGATGGAACACCTCAGAAGAACATGCCCACAGGGGTAGTGCTACAAAACTGCGACATTTCACCAGAGGCTGAACTGGTTCCTATGAAACTAACGGTGAAGTCATATCTAGCGAGGCCATGGAAGGAGTATTCAAGGGCAATCTTCTTGGAGAACACAATTGGTGACTTGATTCAACCGGATGGGTATCTTCAGTGGTCAGGGAACATGTACCTAAACACTTGCTTCTTTGCTGAGTATGGAAACACCGGACCTGGGGCTAACGTTAATGCCAGAGTGAAGTGGGGTCGTGGGGTTCTTAATAAGAACGATGCTGCTCAGTACACTGCTGAGCACTGGATTCAAGCTAGTACATGGTTGCCAGCTACTAGTATACCCTTTGATCCTGCCTTCACTAGAGGATAA 1707 0.4821 MEKTKVASAVSLLLVVGVAVGVVAIVRTNDEKVTGTTGNDGGLISTHSKAVKAMCQNSDDRRLCLDTLNPVNHTDPKEYISTVVKRSLESVIKAFNMSDTLRLEHGNSTPGVKMALEDCRDLLQFAIGELQATKTVLQDNTINHVHDRVAELKNWLGAVFAFQQSCLDGFHTHREKQVRSQLQTGSLDHVGKVTALALDVVSRIAHVLSNFDLHLIVKPSSRRLIEVDQDGYPAWFGVTDRKLLGDVSKGGSIAPNAVVAKDGSGQFKTVLDAINAYPKNNKGRYVIYVKAGIYDEYITVDKNKKNILMYGDGHTKTIITGNKNFVDGWKTMRTATFATVAEDFIAKSIAFENTAGASKHQAVALRVQGDRSAFFDCAIRGFQDTLYAHAHRQFYRNCEISGTVDFIFGYSSTIVQSSKIIVRKPDPNQQNIVVADGTPQKNMPTGVVLQNCDISPEAELVPMKLTVKSYLARPWKEYSRAIFLENTIGDLIQPDGYLQWSGNMYLNTCFFAEYGNTGPGANVNARVKWGRGVLNKNDAAQYTAEHWIQASTWLPATSIPFDPAFTRG* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1282 568 PANTHER PECTINESTERASE 3 562 - -
Amo19g1282 568 SMART PMEI_2 46 200 IPR006501 GO:0004857
Amo19g1282 568 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Amo19g1282 568 Pfam Pectinesterase 256 550 IPR000070 GO:0030599|GO:0042545
Amo19g1282 568 Gene3D - 250 565 IPR012334 -
Amo19g1282 568 CDD PMEI-like_3 53 205 - -
Amo19g1282 568 Pfam Plant invertase/pectin methylesterase inhibitor 50 198 IPR006501 GO:0004857
Amo19g1282 568 SUPERFAMILY Pectin lyase-like 253 561 IPR011050 -
Amo19g1282 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Amo19g1282 568 PANTHER PECTINESTERASE 3 562 - -
Amo19g1282 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 180 IPR006501 GO:0004857
Amo19g1282 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 205 IPR035513 -
Amo19g1282 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1282 Amo-Chr19 25684447 25687483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1282 6 568 Carbohydrate Esterase AT3G05610 38.004 9.17e-134 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1282 K01051 - gmx:100820142 820.461