Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1279 ATGGCCGCAGGAAAAATCCTTGTGTCCGGTATTTCCCTCATCCTGGTTGTGGGTGTTGCCATCGGAGTAGTTGTCGTCGTGAACAACAAGAGTAGCGATCCTTCGTTAGCAGAACACCAAAGGACTGTGACTTCAATGTGCCAGGGGACCGATGACCCTCAGCTTTGCCAGGACACGCTCAAGGATGTTAAATCCTCAGGGTCGGATCCTAAGGCCTACATTGCCGCCTCGGTGGAAGCAACTACTAAGAGCGTGATTCAGGCTTTGAATATGAGTGATCGGCTCTCAGTGGATCATGGCAGTCAAAGCCCGGGCATCAAGATGGCCCTTGATGACTGTAAAGATTTGTTGGAATTTGCCCTAGATAGCCTGGAGGCATCAGCAAATTTGGTCCGAGATAACAACATTCAAGCTGTTCATGATCAGACGCCTGATTTCAGGAACTGGCTGAGTGCTGTTATCTCGTACCAACAATCTTGCATGGAAGGTTTTGACGACTCGCAAGACGGCGAGGCCAAAGTGAAAGAGCAGTTGCATACTCAAAGCTTGGACCAGATGGGGAAACTCACTGCGATCACGCTTGATATTGTCACCGATTTGTCTAAGATCCTTGAAACCTTTGGGTTGAAATTGGATTTGAAACCTGCCTCTCGCCGCCTCATGGAGGCAACCGATAACAATGTGGATGCAGAAGGGTTCCCGGGTTGGATGTCTGCAGCGGATAGGAAGCTCATGGGAAATGGCGGCGGCGGAGGTGGCAACGGTGCACCAAATGCTGTGGTTGCTCAAGATGGAAGTGGTCAATTTAGGACCATTAAGGATGCTATTAACTCATATCCTAATGGCTTCAAAGGAAGATACATTATCTATGTTAAGGCTGGGGTTTACAACGAGTATATTATCATTCCAAAGACTGCAGCGAATATTCTTATGTACGGTGATGGCCCAACAAGGACTATTGTCACTGGTCACAAGAACTTTGTAGATGGTGTCAAGACAATGCAGACTGCAACCTTCGCGAACACAGCGCCTGGGTTCATCGCGAAGTCAATGGCATTCGAAAACACCGCAGGTTGGGCAAAACACCAAGCAGTGGCGTTCCGAAACCAAGGAGACATGTCCGCTTTCTTCGACGTCGCGCTGCATGGTTACCAAGACACCCTCTACGTCCAAGCCAACCGTCAATTCTTCCGAAACTGCGAGATCTCCGGTACCATCGACTTCATCTTCGGCGCATCCGCCACCATAATCCAAAACTCCAGGATCATAGTTCGGAAGCCAGGTCCCAACCAATTCAACACCGTCACGGCAGACGGTACGGCGCAAAAGAACATGGCAACAGGGATCGTTATCCAGAACTGCGAGATCATGCCGGAGAGGGAACTCTTCCCCGACAGACTCTCAGTGAAATCGTACCTTGGTAGGCCATGGAAACAGTATGCAAAGACAGTGGTTATGGAGTCGAATTTGGGTGACCTTTTCTCACCTGATGGATGGGCTCCTTGGGCTGGATCCCAGTTTCTTAATACCTTGTACTATGCTGAGTTCAACAACGTTGGACCCAGTGCTAATGTTCAAGGAAGGGTTAAGTGGAAAGGTTACCACCCAAACATTGATAGGAACCAAGCTGCGGCATTCACTGTTGGACAGTTTCTCAAAGCGGGACCCACTGGTACTGCTGATGATTGGTTGAGGGCAACTGGCATTCCTTACGATGTTGGATTCACAAAATGA 1734 0.4919 MAAGKILVSGISLILVVGVAIGVVVVVNNKSSDPSLAEHQRTVTSMCQGTDDPQLCQDTLKDVKSSGSDPKAYIAASVEATTKSVIQALNMSDRLSVDHGSQSPGIKMALDDCKDLLEFALDSLEASANLVRDNNIQAVHDQTPDFRNWLSAVISYQQSCMEGFDDSQDGEAKVKEQLHTQSLDQMGKLTAITLDIVTDLSKILETFGLKLDLKPASRRLMEATDNNVDAEGFPGWMSAADRKLMGNGGGGGGNGAPNAVVAQDGSGQFRTIKDAINSYPNGFKGRYIIYVKAGVYNEYIIIPKTAANILMYGDGPTRTIVTGHKNFVDGVKTMQTATFANTAPGFIAKSMAFENTAGWAKHQAVAFRNQGDMSAFFDVALHGYQDTLYVQANRQFFRNCEISGTIDFIFGASATIIQNSRIIVRKPGPNQFNTVTADGTAQKNMATGIVIQNCEIMPERELFPDRLSVKSYLGRPWKQYAKTVVMESNLGDLFSPDGWAPWAGSQFLNTLYYAEFNNVGPSANVQGRVKWKGYHPNIDRNQAAAFTVGQFLKAGPTGTADDWLRATGIPYDVGFTK* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1279 577 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Amo19g1279 577 PANTHER PECTINESTERASE 4 575 - -
Amo19g1279 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 201 IPR035513 -
Amo19g1279 577 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 199 IPR006501 GO:0004857
Amo19g1279 577 PANTHER PECTINESTERASE 4 575 - -
Amo19g1279 577 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Amo19g1279 577 Pfam Pectinesterase 258 553 IPR000070 GO:0030599|GO:0042545
Amo19g1279 577 Pfam Plant invertase/pectin methylesterase inhibitor 42 196 IPR006501 GO:0004857
Amo19g1279 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 202 IPR035513 -
Amo19g1279 577 SMART PMEI_2 38 196 IPR006501 GO:0004857
Amo19g1279 577 CDD PMEI-like_3 45 202 - -
Amo19g1279 577 Gene3D - 253 575 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1279 Amo-Chr19 25657029 25659786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1279 4 575 Carbohydrate Esterase AT2G47030 39.209 1.58e-131 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1279 K01051 - gmx:100789650 852.818