Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1277 ATGAGTTGTTTTGGCTGTTGTGAAGAGGATGATTATGCCAAGTCAGTTGAAAATGGAGGACAATATGCCGTGAAAAACCCAGCAGGGAATAATGGAAACTATCATTCTTCTGAAACCGCAAAACCGCAGACCGTTAAAGTCCAACCCATTGAAGTTCCTGCTATACCGGCAGATGAACTAAAAGAAATTACAAATAATTTTGCACAAGAGGCTCTGGTTGGAGAGGGATCATATGGAAGAGTATATCATGCGGTTCTTAAAAGTGGGCAGGATGCTGCAATCAAGAAGTTAGATGCTAGTAAACAGCCTGATGATGAATTTTTGGCCCAAGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTAGTTATTGTGTTGATGGAGGTTCCCGAGTTCTTGCTTATGAATTTGCTGCTAATGGGTCTCTTCATGATATCTTACATGGCAGAAAAGGTGTAAAAGGAGCAATACCTGGCCCAATTTTGACATGGGCACAGAGAGTGAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCACATTATCCACAGGGACATCAAATCAAGCAATGTACTAATCTTTGACGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGATGTTTACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAACCCGTTGATCATACACTACCACGTGGACAACAGAGTCTGGTTACTTGGGCTACACCAAGACTTAGCGAGGATAAAGTCAAGCAGTGTGTTGATCCGAAACTTGGAGCAGAATATCCACCCAAAGCAATTGCTAAGATGGCTGCTGTTGCTGCGTTGTGTGTTCAATATGAAGCTGATTTTAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACGGCACGACAGGGACCTCCTGGTGAAACACCAAATTAA 1080 0.4241 MSCFGCCEEDDYAKSVENGGQYAVKNPAGNNGNYHSSETAKPQTVKVQPIEVPAIPADELKEITNNFAQEALVGEGSYGRVYHAVLKSGQDAAIKKLDASKQPDDEFLAQVSMVSRLKHENFVQLLSYCVDGGSRVLAYEFAANGSLHDILHGRKGVKGAIPGPILTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDPKLGAEYPPKAIAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARQGPPGETPN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1277 359 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1277 359 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
Amo19g1277 359 Gene3D Phosphorylase Kinase; domain 1 28 141 - -
Amo19g1277 359 Pfam Protein tyrosine and serine/threonine kinase 71 343 IPR001245 GO:0004672|GO:0006468
Amo19g1277 359 SMART serkin_6 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1277 359 MobiDBLite consensus disorder prediction 24 43 - -
Amo19g1277 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Amo19g1277 359 SUPERFAMILY Protein kinase-like (PK-like) 42 343 IPR011009 -
Amo19g1277 359 PIRSF ILK 13 352 - -
Amo19g1277 359 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Amo19g1277 359 Gene3D Transferase(Phosphotransferase) domain 1 143 352 - -
Amo19g1277 359 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1277 Amo-Chr19 25593499 25597124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1277 59 351 Receptor kinase-like Gene Family AT3G58690 49.153 8.16e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Amo19g1277 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1277 K13436 - tcc:18613791 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1277 19 25593499 25597124 Amo19g1277 19 25593499 25597124 ECH
Amo06g0085 06 862471 866515 Amo19g1277 19 25593499 25597124 PCT
Amo19g1277 19 25593499 25597124 Amo06g0085 06 862471 866515 PCT