Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1232 ATGGCTTCAGTTTACCGCAATTCGAGCTCAGGATCGGAGGGCGGAGAGCCCGTGATGGATGAGAGGAAGAGGAAGAGGATGCTGTCGAACCGCGAATCGGCGCGGCGGTCGCGGATGAGGAAGCAAAAGCAGCTGGAGGATTTGACGGAGGAGGTGAAGCGGCTTGAGGCCTCGAACAAGCAGTTGATTGAGGCCATTAAGATGAAGGAGGAATCTTATGCAGAGATTGAATCCTCAAACGGCGTCATCAGGGCTCAGATCACGGAGCTTGGGGACAGGCTTAAGTTCCTCAATTCCATCCTCGAAATTGCTGAAGTCGTAAGCGGCGGTGAGCTCTCCGTTGATTTACCGGAGATTCTGGATCCTCTCATGAAGCCTTGGCAGATTCCTTACCCATTTCAGCCAATCATGGCTTCGGCAGACATGTTCCTGCATTGA 438 0.5297 MASVYRNSSSGSEGGEPVMDERKRKRMLSNRESARRSRMRKQKQLEDLTEEVKRLEASNKQLIEAIKMKEESYAEIESSNGVIRAQITELGDRLKFLNSILEIAEVVSGGELSVDLPEILDPLMKPWQIPYPFQPIMASADMFLH* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1232 145 Coils Coil 31 72 - -
Amo19g1232 145 MobiDBLite consensus disorder prediction 16 47 - -
Amo19g1232 145 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 143 - -
Amo19g1232 145 CDD bZIP_plant_GBF1 23 74 IPR045314 GO:0003700|GO:0006355
Amo19g1232 145 MobiDBLite consensus disorder prediction 1 47 - -
Amo19g1232 145 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Amo19g1232 145 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 78 IPR004827 GO:0003700|GO:0006355
Amo19g1232 145 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 143 - -
Amo19g1232 145 Pfam bZIP transcription factor 22 79 IPR004827 GO:0003700|GO:0006355
Amo19g1232 145 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Amo19g1232 145 SUPERFAMILY Leucine zipper domain 22 73 IPR046347 GO:0003700|GO:0006355
Amo19g1232 145 Gene3D - 20 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1232 Amo-Chr19 24777754 24779211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1232 18 143 bZIP Transcription Factor Family AT3G62420 58.730 3.79e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo19g1232 bZIP_1 9.5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1232 K25786 - gmx:780550 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1232 19 24777754 24779211 Amo19g1232 19 24777754 24779211 ECH
Amo16g0549 16 8929959 8931664 Amo19g1232 19 24777754 24779211 ECH
Amo19g1232 19 24777754 24779211 Amo09g0686 09 11171545 11172833 hybridization
Amo16g0549 16 8929959 8931664 Amo19g1232 19 24777754 24779211 PCT
Amo19g1232 19 24777754 24779211 Amo16g0549 16 8929959 8931664 PCT