Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1231 ATGGATGATTCAACCTCAGATTGTCAGCTCAATCAGGGCGAAGTGGATTTTGAATTTGAATTGAACGAAGTTCCTGAGTTGACTTGTTGTAGTAACGGGTGTAGATCAGGAGTCCTTGGGCCCCTCTCTGTTGTTGATGAGCAGCTTGTTCCCAAGATTGGAATGACCTTTAAAACCCTTGAAGATGCTGCAAAATTTTACAAGGACTATGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAAAAAGGGAAACGAAATTAAGAATCAATTGATCACATGTAGCAGAGAGGAAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCCACAGCTGGTTTAAAATGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTCGTGCTGCATCATTCACACGCTTGCTGTCCAACTCAAGCAGAGATGATCAAACAGCACAGGGAACTAAGCATGTCCGTTCGTCGTACAATAGATAATAACGAGGAAGCCGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCCGGAACAGCTCGCTTATTCAATTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCGGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGAAAGTCCAAGCACAATTCAGAGGAAAGGCGAATTGCATCACTAGACTAACGAATTTCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTTCAGCTCAATATTCAACAAGTTTGTGGTTATTTATGACTCAGTAGCAGCCGAGGTAAAATGCCAATGCTTATTATTTGAGTCGAGAGGGATATTGTGCCGTCACACACTAAGTGTGTTAAGTTTTGAACGAGTAAGCCAAATGTCATCGAGATATATATTGGAACGATGGAGCAAGAAGCAGCACGACGAGCCATTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCAGAATCGGAGGAGCTTACTGCAATTATGCACCGTGCGTACGATAACGTCATGGTTGAGATGGAATCAATGAAAGCCAAAAGGAAGGGGACATATTCTTTATCTCACGAAGACGCCAACTTGGAATCTGTTAACGAGCTTCAAAGCCCTCCAAGGATTCGAACAAGAGGACGTCCCAAAAATAGGCTAGGTTCAAAGTTGGATAAACAGATTGCAAATGCCCCAAAGAAGAAGAAAACGAAAGTTTTAAACGAGTTAAATCTCTTTGCTGCTGCATCAGTGGTGCGTTCAAATTCAAGCCAATATCAAGGACGTGTTATGAATTATCAGTTCAGGGAACCAGTAGCAGCGGATAACTTTTTGGAGAGTTTTACTCATAATTGGCAAATTTTTACATCATCTGTTCAATTTCTTACAAGACTATATAATAGTTACATTAATTAG 1566 0.41 MDDSTSDCQLNQGEVDFEFELNEVPELTCCSNGCRSGVLGPLSVVDEQLVPKIGMTFKTLEDAAKFYKDYAKAAGFSTRVRSTNKKGNEIKNQLITCSREEKWKSKISPTEKTNPTAGLKCPARIYIHTLKDVGAWIISKVVLHHSHACCPTQAEMIKQHRELSMSVRRTIDNNEEAGMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEARFQDVYTHQKFRKVQAQFRGKANCITRLTNFALGYSVYEVGEQVFSSIFNKFVVIYDSVAAEVKCQCLLFESRGILCRHTLSVLSFERVSQMSSRYILERWSKKQHDEPLLEPRSKRFDELVFRSQNICEFASESEELTAIMHRAYDNVMVEMESMKAKRKGTYSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANAPKKKKTKVLNELNLFAAASVVRSNSSQYQGRVMNYQFREPVAADNFLESFTHNWQIFTSSVQFLTRLYNSYIN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1231 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 162 IPR031052 GO:0006355
Amo19g1231 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 180 412 IPR031052 GO:0006355
Amo19g1231 521 Pfam FAR1 DNA-binding domain 65 150 IPR004330 -
Amo19g1231 521 SMART 26again6 305 332 IPR006564 GO:0008270
Amo19g1231 521 MobiDBLite consensus disorder prediction 417 437 - -
Amo19g1231 521 PANTHER OS03G0843700 PROTEIN 47 162 - -
Amo19g1231 521 ProSiteProfiles Zinc finger SWIM-type profile. 294 330 IPR007527 GO:0008270
Amo19g1231 521 PANTHER OS03G0843700 PROTEIN 180 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1231 Amo-Chr19 24773006 24776531 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g1231 FAR1 1.8e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1231 - - adu:110280503 528.094