Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1229 ATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATATAAACATCCAAGCAAAGATCTTGCTTGCATCCACTAAATCTTCTTGTGAAGGAATCAGTCTGGTTAGTGTTTCAAGGGTGGTGCTACTAAATGTGGTTTGGAACCCTTCGGTCAAAAGGCAAGCTATCATCCGTGCTTATAGGCTGGGCCAAAAGAAGGTGGTCTACACTTATCATCTCATAACACATGGGACCACCGAGTACACGAAATACTGCCATCAGGCCAAGAAGGGCCGGTTGTCTGAACTGGTCTTTTCAGCAAGGAACACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTCGATAAGATGGTGCGCCATGGGAAACTGAAGGACTTGTTTGGTGACTGTATGTTGAGAGTTTCCAATACTGAAGAGTGCAGCCATTGTGAACAATTGTCACGTAGGAATAGGAACAGTCGAGAATGGTATTCTTATTTATGA 519 0.4393 MSGKLDKNQRQLLIHSFNDINIQAKILLASTKSSCEGISLVSVSRVVLLNVVWNPSVKRQAIIRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKGRLSELVFSARNTEQDEPKSSAVEFEDEILDKMVRHGKLKDLFGDCMLRVSNTEECSHCEQLSRRNRNSREWYSYL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1229 172 CDD SF2_C_SNF 3 80 - -
Amo19g1229 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 137 IPR027417 -
Amo19g1229 172 Pfam Helicase conserved C-terminal domain 2 69 IPR001650 -
Amo19g1229 172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Amo19g1229 172 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 144 IPR044567 GO:0080188
Amo19g1229 172 Gene3D - 1 168 IPR027417 -
Amo19g1229 172 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1229 Amo-Chr19 24752203 24752904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1229 1 99 RAD5 or RAD16-like Gene Family AT5G43530 37.374 2.62e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1229 K10875 - gmx:100807262 194.512