Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1224 ATGGAGAAATATTATTTGGTGTTCATATCCCCAAAAAATAATGACCAAATCCAAAAAATTAAAAGTCTATTTATGAAATTCAGTTATCATACCTACTTGACTTCTATGAGGTTGGATGCAGCTAATTCTATTTATATAAATAAGGTTCCTCACTTAGAGCAAATTTCATACATAGTCATGGAAGGTCTCTCCTTTTCATATTATAGAGATCATCTTCAAATTTTGGCAATGTTCTCCAACTCATCATCTTCATCTACTCTATATTATATCCAACATGTAAATCAAGATAATGGAGAAGCCTATGGTGAACCTACAAAATACAATTTTTCGTCTATTAACACAAGTTGGATTTCTGAAGCTCTTGAATTTTCTTATTCATACGCATTCAGCAATACTTCATCATTGGGAACCAATTGGAGCATTATTATTGATAGTGGCCATAACCCTTTGTTTCTCAACTCCGCAAGGGTCACAAGAACAAGTGTGATCTCTCTAGGGTTCTCGGAAACAACAGTAACGGATTTTCTCAGGACTCAAAACAATGATCTTCATCAAAGTTCAATGAGCATGTCTTGGGCCACAAAAGATGGAAGGGCTATTGTACAAGGGATCCGAAATACTCGTTTGGTGATTTCTAATGATACAGTTTTGCTTCAATTATTGGACCAAAATGGAAACCCTAAAGGTGTTGGAGACACTGCTATACCGTGCAAAAATGAAAGATTTGGATCTAGTTTGAATATTCAGAATACTGAATATATGATTCACTGCAGCACAATTGATATCATGGGAATAGAATCGGTATATGTTGTGGCTATTCCAAAGAATGAATTACTTAGCTTTGACCAGCATTATAAGAAAAAAGGGTTGACTCTGTTGATTGTAATGATATTCATGATATTGATTGCTCTCCTAAGCTTTCTAAGCATGAATGCAAGAAATGCGAAGCGAGAAATGCGATTGCGTGCCTCACTCTTGAAACAAATGGAAGCTACTCAACAAGCTGAGAGAAAGAACATGAATAAAAGCCTTGCATTTGCTGCTGCCAATCATGATGTTAGGGCTTCTCTTGCAGGCCTTACTGCTTTGATAGACATGTCCTTTGACTTTGTTCAAAATGCGTCTGAATTGGACACCAACTTAAAACAAATGAAAGGTTGCACCCAAGACTTACTAGGGCTGCTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATACAGCTTGAGGAAGAGGAATTTGATGTATCAATTCTGTTGGAAGATATAGTTGACTTATACCACCCTATGGCTTCAAAGAAAGGTGTGGATCTAATCTTGGACCCTTGTGATGGTTCTATTATTAGATACTCACGTGTTAAAGGAGACAGAGGAAGACTCAAACAAGTTTTGTGTAATCTTTTGAGCAATGCTGTTAAATTTACTGATGAGGGGCACATAGTGGTTAGGGCAAGAGCTCAAAAGCCAAGTTTGCATAATTCATTAATGGCTGGTAGTGAAAAACATGTATCATGCTTATGTTTCAAGAAAATTAGCAGTGATGAAATTGAAGGCACGAGTAATTCAACACAAGCAGATCCATATTGCGTTATGGATTTTATATTTGAAGTGGATGATACGGGAAAAGGAATCCCCAAAGAGAAGTACGAGTCTGTGTTTGAGAACTATATCCAAGTCAAAGAAACTTCCCTTGGAGTTGGAGGAACTGGCTTGGGACTTGGGATTGTGCAATCACTGGTGCGTTTGATGCATGGAGACATTGAAATTTCAGAGAAGGACGTGGGAGAAAAGGGAACATGCTTCAAGTTCAATGTTGTCCTTAATGTATACGAGACAATCACGAATGCTGCTAGCACAAAAGAAGAAGAAGAAGAAGGTGTTGATGAAAGAAACCAAACTCAGGCGGCATTACCAACCCTTCAAAGTTGTAGCTCTGGTTCAAGCATTTGTTCCCTTAGTCCAAGATTCCGAATCCGCAGCTCCAGTCCCAAGCCAGCGCCTTCTCGTGTCATTATGCTAATCGCCGATGAGTATCGCCGGAAGGCCACAGAGAAGTTCATGGAGGGCTTAGGGATCAAAGTTGCCGCCGCGAAACGGTTGGAGGATCTATTTGATGTCCTGAAGAAGATGAAACACAAGTGTCTCTATTCAAGCAGCCACAGTAGTGGTTCTCAAGGATCAGAGTATTTGAGTGCGAGCTCTCACTCCCGTTCCAGCAGAGTTAGAGTTGCATTGAGTTCTATGGATGGAAAGACGGATATTGGAGCAGCATCTGATGGCTTTATCCTTATTGTGGTTGAGACAGATGCAGGGCCACTTRTGGAGCTGTGTAAGATAGTTTCCAACTTCAAAAGAGGGCTTTGTAACCCTTGTCAAGTTGTTTGGTTAGATAACAAAATTCTCTTTAAGAACCTTGATAAGGACACGCTTGATCCCAAAGACATGGTTCTATCGAAACCGTTTCACGGTAGCCGTTTGTTCCAGGTTATAAAGCTTCTTCCCGAGTTCGGTGGTGGGAAAAGCTCATCCAAATTGAACACTCAGGAATCCTTTGTGGATCAACCTTCTGTTGGGTCCAAAGAAATACAAGAATGTGAGGATACAGAAAAGCCATTGAGTGGTAAGAAAATTTTGGTTGTTGATGATACTCCATTGATGCGCATGATTGCTTTGCGTACTTTGATCCAGCTTGGAGCGATTATAGAGCAGTGCGAGAATGGAGAAGCAGCTGTGCATCTAGTTCGTGATGGTTTAATCAAGGATTTTCCTAATCCCCCTTACGATTACATCTTAATGGATTGCCAGATGCCAATAATGGATGGGTTCGAGGCAACAAGGAAAATAAGAAAGATAGAAAAGAGCTATGGTAATATTCGCATTCCTATAATTGCATTAACAGCTGACAGTGACAAAATGACCATAGACGCTGGAATGGACTTTCACTTGGTAAAGCCTATCGACAGAAACAAATTTCTTGAAGCCATTCGAGACATCAATGCTAAAAAGCGCTCCATTTAA 3024 0.3965 MEKYYLVFISPKNNDQIQKIKSLFMKFSYHTYLTSMRLDAANSIYINKVPHLEQISYIVMEGLSFSYYRDHLQILAMFSNSSSSSTLYYIQHVNQDNGEAYGEPTKYNFSSINTSWISEALEFSYSYAFSNTSSLGTNWSIIIDSGHNPLFLNSARVTRTSVISLGFSETTVTDFLRTQNNDLHQSSMSMSWATKDGRAIVQGIRNTRLVISNDTVLLQLLDQNGNPKGVGDTAIPCKNERFGSSLNIQNTEYMIHCSTIDIMGIESVYVVAIPKNELLSFDQHYKKKGLTLLIVMIFMILIALLSFLSMNARNAKREMRLRASLLKQMEATQQAERKNMNKSLAFAAANHDVRASLAGLTALIDMSFDFVQNASELDTNLKQMKGCTQDLLGLLNSILDTSKIEAGKIQLEEEEFDVSILLEDIVDLYHPMASKKGVDLILDPCDGSIIRYSRVKGDRGRLKQVLCNLLSNAVKFTDEGHIVVRARAQKPSLHNSLMAGSEKHVSCLCFKKISSDEIEGTSNSTQADPYCVMDFIFEVDDTGKGIPKEKYESVFENYIQVKETSLGVGGTGLGLGIVQSLVRLMHGDIEISEKDVGEKGTCFKFNVVLNVYETITNAASTKEEEEEGVDERNQTQAALPTLQSCSSGSSICSLSPRFRIRSSSPKPAPSRVIMLIADEYRRKATEKFMEGLGIKVAAAKRLEDLFDVLKKMKHKCLYSSSHSSGSQGSEYLSASSHSRSSRVRVALSSMDGKTDIGAASDGFILIVVETDAGPLXELCKIVSNFKRGLCNPCQVVWLDNKILFKNLDKDTLDPKDMVLSKPFHGSRLFQVIKLLPEFGGGKSSSKLNTQESFVDQPSVGSKEIQECEDTEKPLSGKKILVVDDTPLMRMIALRTLIQLGAIIEQCENGEAAVHLVRDGLIKDFPNPPYDYILMDCQMPIMDGFEATRKIRKIEKSYGNIRIPIIALTADSDKMTIDAGMDFHLVKPIDRNKFLEAIRDINAKKRSI* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1224 1007 SMART REC_2 877 997 IPR001789 GO:0000160
Amo19g1224 1007 PANTHER TWO-COMPONENT HISTIDINE KINASE 46 999 - -
Amo19g1224 1007 PANTHER HISTIDINE KINASE CKI1-LIKE 46 999 - -
Amo19g1224 1007 Gene3D - 325 408 - -
Amo19g1224 1007 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 396 606 IPR036890 -
Amo19g1224 1007 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 408 IPR036097 GO:0000155|GO:0007165
Amo19g1224 1007 Gene3D - 859 1006 - -
Amo19g1224 1007 PRINTS Bacterial sensor protein C-terminal signature 569 587 IPR004358 GO:0016310|GO:0016772
Amo19g1224 1007 PRINTS Bacterial sensor protein C-terminal signature 553 563 IPR004358 GO:0016310|GO:0016772
Amo19g1224 1007 PRINTS Bacterial sensor protein C-terminal signature 535 549 IPR004358 GO:0016310|GO:0016772
Amo19g1224 1007 SUPERFAMILY CheY-like 873 1000 IPR011006 -
Amo19g1224 1007 SMART HKATPase_4 457 611 IPR003594 -
Amo19g1224 1007 Gene3D - 409 615 IPR036890 -
Amo19g1224 1007 SMART HisKA_10 341 407 IPR003661 GO:0000155|GO:0007165
Amo19g1224 1007 ProSiteProfiles Histidine kinase domain profile. 348 611 IPR005467 -
Amo19g1224 1007 ProSiteProfiles Response regulatory domain profile. 878 1001 IPR001789 GO:0000160
Amo19g1224 1007 CDD REC_hyHK_CKI1_RcsC-like 879 997 - -
Amo19g1224 1007 Pfam Response regulator receiver domain 879 998 IPR001789 GO:0000160
Amo19g1224 1007 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 609 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1224 Amo-Chr19 24662907 24668595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1224 51 1004 Histidine Kinase Gene Family AT2G47430 39.269 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo19g1224 HATPase_c 1.1e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1224 - - ahf:112708949 1721.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1224 19 24662907 24668595 Amo19g1224 19 24662907 24668595 ECH