Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1221 ATGCGAGCAGTTTCAAACATGAGGGTGCTTCTCCGCTTCTTCTTCTCGGGTTTTCTTCTGGCGGTGTCGGTGGCCGCCGTGAGTCCGTCTCTGAACGACGACGTGTTGGGATTGATTGTGTTCAAAGCTGACATACAAGATCCCAAGGGAAAGCTTTCATCTTGGAACGAAGACGATGATAACGCGTGTGGTGGTGGTTGGGTTGGKGTGAGGTGYAATCCTAGATCCAACAGGGTCATTGAGCTCAACCTTGATGGCTTCTCTCTTTCTGGGAAGATTGGTCGAGGTTTGTTGAGGTTGCAGTTCTTAAGGAAGCTTTCACTCGCCAAGAACAACCTCACTGGTGGAATAAGCGCCAACATTGCTCACATTGAAAATCTTAGAGTCATTGATTTGAGTGATAACAATCTCTCAGGAGAAGTTCCTGATGATTTTTTCCGACAATGTGGGTCCCTAAGGGCTGTTTCCTTGGCCAGGAACAGGTTCTCTGGGAAGGTTCCTTCTAGTTTGGGCTCTTGTTCTGCTGTTGCTTCCATTGATATGTCTTCTAACCAGTTTTCAGGTTCTGTTCCTGCTGGGGTTTGGAGTTTGAGTGGTCTCAGGTCTCTTGATTTGTCTGGGAACTTGTTGGAGGGTGAGATTCCAAAAGGGGTTGATGCTTTAAAGAATTTGAGGAGCATAAGCCTAGCAAACAATCAGATTTCAGGAAAGATTCCGGAAGGTTTTGGAAGCTGCTTGCTCTTGAGATCTGTTGATTTTGGTGAGAATTCGCTTTCCGGTACCCTGCCGGGGGATTTGAAGRATCTAAAATTGTGTAGTTACCTTGGTTTGCGTGGGAATGCTCTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGATAGGCCTTGAGACATTAGACWTCTCGCGGAATAGGTTTTCTGGTCAGGTGCCGAATTCTGTTGGAACTCTTCAGTCATTGAAGATGTTGAATTTGTCTGGTAACAGTTTCACTAATAACCTGCCTGAGTCTATGGCAAATTGCACTAGCCTATTGGCCTTGGATGTTAGCCATAATTCGATCTCTGGTGCTCTTCCATCTTGGATCTTCAAGTCAGATTTGGAGAATGTTCTGGTATCTGAAAACAAGGCGCGAGGTGGCTTGAAAACTTCTTTGTTTTCCTTGGCTGAAGTTGCAGTTCAAAGTCTTAAAGTTTTGGATTTTTCTGATAACACATTTTCTGGTGAGATTCCATCTGCTATTGGAGRTTTAAGCAGCTTGCAGTTTCTGAATTTATCACAAAACTCCCTTAGAGGTCCTATACCTGCTGYAATTGGTGAATTGAAAATGTTGTCTAGTCTTGACCTRAGTGAGAATCATCTAAATGGAAGCATACCTTGGGAAATAGCTGGAGCCATGTCCTTGAAGGAGCTGAGATTGGAAAATAATTTTTTAGTTGGGAAAATACCAACTTCCATTGAGAACTGCTCTTCTTTATCAACTTTGATCCTGGCGCAGAACAGACTGAGTGGTTTGATACCTGCAGCAGTCGCAAAATTAACCAACCTACAAACTGTTGACTTCTCATTTAACAACCTTACTGGAACCCTTCCTAAGCAATTGGCCAACCTTCCCAATCTAGTTTCCTTCAATTTATCTCACAACAATCTACAAGGAGAACTGCCAGCAGGTGGTTTCTTCAACACCATTTCGCCTTACTCTGTTTCCGGGAATCCATCCCTTTGTGGCTCTGCTGTGAACAGATCATGCCCTGCTGTCATGCCCAAGCCTATTGTTCTAAATCCCAACACTTCCACTGACTCTGGCTCGGGTACACTACCACCAACTATGGGACACAAGAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTATAGTTGGTGTRATTGGCATCACTGTTCTGAATCTCCGTGTTCGGGCCACYGAGTCTCGATCTCCAGCCACCCTCACATTTTCTGCTGGGGATGAATTCAGCCATTCCCCAACTACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCAGGCGAGCCTGATTTCAGCTCTGGAGCACATGCCTTGCTTAATAAGGATTGTGAGCTTGGACGTGGAGGGTTCGGAGCTGTATACCAGACAGTTCTTAAAGATGGACGATCGGTCGCCATAAAGAAACTCACTGTATCCAGCCTTGTCAAGTCCCAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTAGTGGAATTAGAAGGTTATTATTGGACTCCATCACTGCAGCTCCTTATATCTGAGTATGTCTCAGGTGGCAGTCTCTACAAGCATCTCCATGAAGGATCGGGTGGAAACTTCCTCTCATGGAATGAGAGGTTCAATGTGATTCTTGGGACAGCAAAGGCCTTAGCTCACTTGCACAACTCAAACATTATTCACTATAACATTAAGTCTACCAATGTCCTTCTTGACAGCTACGGCGAACCAAAAGTAGGGGATTTTGGTCTAGCAAGGCTGCTACCAATGCTTGACAGGTATGTTCTGAGTAGCAAAATTCAAAGCGCCCTTGGCTACATGGCACCCGAGTTTGCCTGCAAGACAGTGAAAATTACCGAAAAATGTGATATTTACGGGTTTGGAGTCTTGGTCTTGGAGGTTGTTACAGGGAAGAGGCCCGTTGAATACATGGAGGATGATGTGGTGGTACTCTGTGACATGGTGAGAGGCACATTGGAAGAAGGCAGGGTGGAGGAATGCATCGACGAAAGGCTACAAGGGAAGTTCCCAGCAGAGGAAGCGATTCCGGTGATGAAGTTAGGCTTAATATGTACCTCACAAGTGCCATCCAATAGGCCTGATATGGGAGAGGTTGTTAGCATACTGGAGCTGATAAGGTGCCCCTCCGAAGAACAAGAGGAGTTGGTATGA 2934 0.4513 MRAVSNMRVLLRFFFSGFLLAVSVAAVSPSLNDDVLGLIVFKADIQDPKGKLSSWNEDDDNACGGGWVGVRCNPRSNRVIELNLDGFSLSGKIGRGLLRLQFLRKLSLAKNNLTGGISANIAHIENLRVIDLSDNNLSGEVPDDFFRQCGSLRAVSLARNRFSGKVPSSLGSCSAVASIDMSSNQFSGSVPAGVWSLSGLRSLDLSGNLLEGEIPKGVDALKNLRSISLANNQISGKIPEGFGSCLLLRSVDFGENSLSGTLPGDLKXLKLCSYLGLRGNALSGEVPEWIGEMIGLETLDXSRNRFSGQVPNSVGTLQSLKMLNLSGNSFTNNLPESMANCTSLLALDVSHNSISGALPSWIFKSDLENVLVSENKARGGLKTSLFSLAEVAVQSLKVLDFSDNTFSGEIPSAIGXLSSLQFLNLSQNSLRGPIPAXIGELKMLSSLDLSENHLNGSIPWEIAGAMSLKELRLENNFLVGKIPTSIENCSSLSTLILAQNRLSGLIPAAVAKLTNLQTVDFSFNNLTGTLPKQLANLPNLVSFNLSHNNLQGELPAGGFFNTISPYSVSGNPSLCGSAVNRSCPAVMPKPIVLNPNTSTDSGSGTLPPTMGHKRIILSISALIAIGAAAVIIVGVIGITVLNLRVRATESRSPATLTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLKDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTPSLQLLISEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHNSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDIYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGTLEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVSILELIRCPSEEQEELV* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1221 977 Pfam Leucine rich repeat 491 550 IPR001611 GO:0005515
Amo19g1221 977 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Amo19g1221 977 Gene3D Transferase(Phosphotransferase) domain 1 771 976 - -
Amo19g1221 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 975 - -
Amo19g1221 977 Pfam Protein tyrosine and serine/threonine kinase 696 962 IPR001245 GO:0004672|GO:0006468
Amo19g1221 977 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 18 975 - -
Amo19g1221 977 SUPERFAMILY L domain-like 31 237 - -
Amo19g1221 977 SMART LRR_sd22_2 513 539 - -
Amo19g1221 977 SMART LRR_sd22_2 221 244 - -
Amo19g1221 977 SMART LRR_sd22_2 100 129 - -
Amo19g1221 977 SMART LRR_sd22_2 197 220 - -
Amo19g1221 977 ProSiteProfiles Protein kinase domain profile. 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1221 977 SUPERFAMILY Protein kinase-like (PK-like) 698 963 IPR011009 -
Amo19g1221 977 Gene3D Phosphorylase Kinase; domain 1 688 770 - -
Amo19g1221 977 Gene3D Ribonuclease Inhibitor 32 312 IPR032675 -
Amo19g1221 977 SUPERFAMILY RNI-like 178 556 - -
Amo19g1221 977 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Amo19g1221 977 CDD STKc_IRAK 700 966 - -
Amo19g1221 977 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Amo19g1221 977 Gene3D Ribonuclease Inhibitor 313 588 IPR032675 -
Amo19g1221 977 SMART LRR_typ_2 417 441 IPR003591 -
Amo19g1221 977 SMART LRR_typ_2 537 561 IPR003591 -
Amo19g1221 977 SMART LRR_typ_2 124 148 IPR003591 -
Amo19g1221 977 SMART LRR_typ_2 513 536 IPR003591 -
Amo19g1221 977 SMART LRR_typ_2 317 341 IPR003591 -
Amo19g1221 977 SMART LRR_typ_2 197 220 IPR003591 -
Amo19g1221 977 SMART LRR_typ_2 221 245 IPR003591 -
Amo19g1221 977 Pfam Leucine Rich Repeat 467 489 IPR001611 GO:0005515
Amo19g1221 977 Pfam Leucine Rich Repeat 126 145 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1221 Amo-Chr19 24634849 24639075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1221 24 976 Receptor kinase-like Gene Family AT3G56370 67.921 0.0 1270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Amo19g1221 PK_Tyr_Ser-Thr 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1221 - - gmx:100791629 1553.88