Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1216 ATGCAATCGAATGAATTTGGCCACCGTTTTCATTTTACAACTTGGAGTCATTATTATATTAGCACTCAGCACTTATTATTATGTTCCTCTTCCTCTAACATTTCTTCAACTGCTTCCTTGAATCTGAGGCTTGCACTCAGCACTCATGAAGAATGTGGTGGAAGCCTGTTTGTGAAGGTGTACATGGAAGGCATTCTAATAGGGAGGAAACTCGACACCACTATTCTCTGGGGTATAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTCCTCACTTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGGGATGTTCCTTGGGAGATGTTTGCTTCCACTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCATTACCTCTTGA 402 0.4154 MQSNEFGHRFHFTTWSHYYISTQHLLLCSSSSNISSTASLNLRLALSTHEECGGSLFVKVYMEGILIGRKLDTTILWGIEMDEVVVQPGERCHVLTYEDEEGDLVMVGDVPWEMFASTVKRLKITRVDTFITS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1216 133 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 130 IPR003311 GO:0005634|GO:0006355
Amo19g1216 133 Gene3D - 56 131 - -
Amo19g1216 133 PANTHER AUXIN-INDUCED PROTEIN 71 130 - -
Amo19g1216 133 SUPERFAMILY CAD & PB1 domains 50 125 - -
Amo19g1216 133 Pfam AUX/IAA family 93 126 IPR033389 -
Amo19g1216 133 ProSiteProfiles PB1 domain profile. 55 129 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1216 Amo-Chr19 24408397 24411945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1216 59 128 B3 DNA Binding Superfamily AT3G61830 34.177 6.07e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo19g1216 AUX_IAA 4.2e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1216 K14484 - gmx:100783140 117.857