Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo19g1213 | GACGAAGAGGCACTGCTTCTCGCGAGCCTCGTCGTTGAAGACACACTCGATAGAGATTTCAAACACAAGAAGCGCTCTGTCTTGAACTCTAAGACTCCACCAACCAATTCAAGAAGGAAACGCAGGGCACAGAGTTCCCCAGAATCGATACGAGTGGCTGTTTTTGATCTTGACGAAGAAGAGACTCCAAGAAAAGATAGTGAGAAAAAGACTAAAGAAAAGAAGGCCACTGTAAACGAAGAGAGTAAAAAAGGAGGGAAGGAATCCGGTGTTGCTGCACTTCCCTGCATTTATAAGCTCAGAGATGAGCTTTCTTGCGCGATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACCCCTTGTGGTCACAGCTTTTGTAAAAGGTGCTTTCGATCTGCTACAGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAATTAATAGGACCGAAATGCTGGTCGCAAATTAGCGACCGATTTCACAATCGAAAAGTTGGTCACTATTTAGCGACCGATATAATCAGTGACCGAAAAAAATTTGGTCACCATTTAGCGATTGATTATATTAGCGACCGATACTCTATGATGAGGGTTTGGTGTCCTTGTTCAAAAATCGGTCGCTGA | 624 | 0.4375 | DEEALLLASLVVEDTLDRDFKHKKRSVLNSKTPPTNSRRKRRAQSSPESIRVAVFDLDEEETPRKDSEKKTKEKKATVNEESKKGGKESGVAALPCIYKLRDELSCAICLEICFEPSTTPCGHSFCKRCFRSATDKCGKKCPKCRQLIGPKCWSQISDRFHNRKVGHYLATDIISDRKKFGHHLAIDYISDRYSMMRVWCPCSKIGR* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo19g1213 | 207 | SMART | ring_2 | 106 | 144 | IPR001841 | - | |
| Amo19g1213 | 207 | MobiDBLite | consensus disorder prediction | 53 | 87 | - | - | |
| Amo19g1213 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 167 | IPR013083 | - | |
| Amo19g1213 | 207 | PANTHER | UNCHARACTERIZED | 1 | 149 | - | - | |
| Amo19g1213 | 207 | Pfam | Zinc finger, C3HC4 type (RING finger) | 106 | 144 | - | - | |
| Amo19g1213 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 145 | IPR001841 | - | |
| Amo19g1213 | 207 | MobiDBLite | consensus disorder prediction | 23 | 87 | - | - | |
| Amo19g1213 | 207 | SUPERFAMILY | RING/U-box | 100 | 151 | - | - | |
| Amo19g1213 | 207 | PANTHER | - | 1 | 149 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo19g1213 | Amo-Chr19 | 24319473 | 24322081 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo19g1213 | 27 | 148 | C2H2 Transcription Factor Family | AT5G39550 | 31.707 | 3.52e-07 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo19g1213 | - | - | gsj:114390146 | 200.675 |