Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1213 GACGAAGAGGCACTGCTTCTCGCGAGCCTCGTCGTTGAAGACACACTCGATAGAGATTTCAAACACAAGAAGCGCTCTGTCTTGAACTCTAAGACTCCACCAACCAATTCAAGAAGGAAACGCAGGGCACAGAGTTCCCCAGAATCGATACGAGTGGCTGTTTTTGATCTTGACGAAGAAGAGACTCCAAGAAAAGATAGTGAGAAAAAGACTAAAGAAAAGAAGGCCACTGTAAACGAAGAGAGTAAAAAAGGAGGGAAGGAATCCGGTGTTGCTGCACTTCCCTGCATTTATAAGCTCAGAGATGAGCTTTCTTGCGCGATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACCCCTTGTGGTCACAGCTTTTGTAAAAGGTGCTTTCGATCTGCTACAGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAATTAATAGGACCGAAATGCTGGTCGCAAATTAGCGACCGATTTCACAATCGAAAAGTTGGTCACTATTTAGCGACCGATATAATCAGTGACCGAAAAAAATTTGGTCACCATTTAGCGATTGATTATATTAGCGACCGATACTCTATGATGAGGGTTTGGTGTCCTTGTTCAAAAATCGGTCGCTGA 624 0.4375 DEEALLLASLVVEDTLDRDFKHKKRSVLNSKTPPTNSRRKRRAQSSPESIRVAVFDLDEEETPRKDSEKKTKEKKATVNEESKKGGKESGVAALPCIYKLRDELSCAICLEICFEPSTTPCGHSFCKRCFRSATDKCGKKCPKCRQLIGPKCWSQISDRFHNRKVGHYLATDIISDRKKFGHHLAIDYISDRYSMMRVWCPCSKIGR* 208
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1213 207 SMART ring_2 106 144 IPR001841 -
Amo19g1213 207 MobiDBLite consensus disorder prediction 53 87 - -
Amo19g1213 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 167 IPR013083 -
Amo19g1213 207 PANTHER UNCHARACTERIZED 1 149 - -
Amo19g1213 207 Pfam Zinc finger, C3HC4 type (RING finger) 106 144 - -
Amo19g1213 207 ProSiteProfiles Zinc finger RING-type profile. 106 145 IPR001841 -
Amo19g1213 207 MobiDBLite consensus disorder prediction 23 87 - -
Amo19g1213 207 SUPERFAMILY RING/U-box 100 151 - -
Amo19g1213 207 PANTHER - 1 149 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo19g1213 Amo-Chr19 24319473 24322081 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1213 27 148 C2H2 Transcription Factor Family AT5G39550 31.707 3.52e-07 48.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1213 - - gsj:114390146 200.675