Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1212 ATGGATGTTAAKGTTATTAAGAAAAGTGAAGGRTCACAGGTGCAACAACTTGCAAACGAGATGGGAYTAAGAAAAGGTCCATGGACGGTTGACGAGGACGCCATTCTCACCAATTAYATCTCCACACACGGTGAGGGTCACTGGAATTCCGTCGCACGTTCTGCAGGATTGAAGAGAAGCGGTAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGACGTGCGCCGTGGAAATATCACACTCCAAGAACAGATATTGATTCTTGACCTCCACTTCCGGTGGGGCAATAGGTGGTCAAAGATTGCTCAGCACCTGCCAGGAAGAACGGACAACGAAATCAAGAACTACTGGMGGACGAGGGTGATAAAGCAGGCGAAGCAGTTAAAGTGCGAYGTTAACAGCAAGCAGTTTAGAGACGCCTTGCGTTACGTGTGGATGCCGCGATTGCTCGAGAGGCTCCACCCTGCACCACAAAAACTCACTAACCAAACCGAACCTGAAACCCAAACCGGAGTTCTTGTTTCTAACCGAAACGGTTCAGATTCCGGACCTTTACTGTGCGCGAAACAGAGCAACTGCCTATCGGACTCGTCGTCGGGACAGARTGYGAGTGTGGGAAATCAATGGTCAAGTTTCAATAATCAGYTGTTGTTTGAACAGGGGACAAATGRAAATGGWCATRGTTGTGGTGGTGGTGGTGAGTCACTAGAGTRTTTGTGGAATGATGAGAATGTGTGGTTCTTGCAACAACAACTTTGCGATGAYCTTGAAGTGAAATTCAATTCTCTTGCGTGA 801 0.4682 MDVXVIKKSEGSQVQQLANEMGLRKGPWTVDEDAILTNYISTHGEGHWNSVARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHFRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERLHPAPQKLTNQTEPETQTGVLVSNRNGSDSGPLLCAKQSNCLSDSSSGQXXSVGNQWSSFNNQLLFEQGTNXNGHXCGGGGESLEXLWNDENVWFLQQQLCDDLEVKFNSLA* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1212 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Amo19g1212 266 PANTHER MYB TRANSCRIPTION FACTOR 16 255 - -
Amo19g1212 266 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Amo19g1212 266 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Amo19g1212 266 Gene3D - 82 123 - -
Amo19g1212 266 CDD SANT 82 121 IPR001005 -
Amo19g1212 266 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Amo19g1212 266 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Amo19g1212 266 SMART sant 77 125 IPR001005 -
Amo19g1212 266 SMART sant 24 74 IPR001005 -
Amo19g1212 266 CDD SANT 27 72 IPR001005 -
Amo19g1212 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Amo19g1212 266 Gene3D - 25 77 - -
Amo19g1212 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 255 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo19g1212 266 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1212 Amo-Chr19 24284086 24285695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1212 23 257 MYB Transcription Factor Family AT2G47190 50.980 2.34e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo19g1212 Myb_DNA-binding 5.2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1212 19 24284086 24285695 Amo19g1212 19 24284086 24285695 ECH