Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1205 ATGGCTGTCAAAACCCGTTTCCAAGTGATTATGATGATGATCACTGTGTTCCTTCTTTCATCTTTATGCATCACTTTGGGAACCAAATTAAAAGTTGTTGGAGGTAGTGGTCCAGATTTAAGGCTTAGAGATGCTGAGAGTAACAAAGTTAGAATAACGGTAAGTCAAGACGGTGCTGGTGACTTCAAGACCGTTACAGATGCTGTTAATAGCATCCCTCAATGGAACAATAGGAGATTCATTCTGTACATTGCACCAGGTATTTATAGGGAGAAGATAATGATCCCAAGAACGCTTCCTTTTGTTACATTCTTAGGGGATGCTAGTGATCCACCAACCATTACAGGGAATGATACAGCTTCTATCCTTGGAAGAAATGGAAAACCAATTGGCACTTTCCAGAGTGCAACAGTTGCTGTCGACGCTAACTATTTTCTTGCCATCAACATCAAATTTGAGAACAGAGCTGCACACTGGATTGGAAGGAGAGGGGAACAAGGAGTGGCGCTTCGAATTTCAGGGACCAAAGCTGCATTTTACAATTGCACATTCTATGGCGCTCAGGACACATTATATGATCACAAAGGCCTTCATTACTTCAACAATTGCCTCATTCAAGGTTCTGTTGATTTCATCTTTGGCTCTGGCAGGTCTCTTTACGAGAACTGCTATCTAAATTCCACAACAAGGAAGGTGGCTTCCATCACAGCTCAAAAGCGAACAAATTCATCAATGGAAAGTGGATTTTCGTTCAAAAACTGCACAGTCACAGGGAGTGGCCAAGTTTTTCTTGGACGAGCCTGGGGCGATTATTCAACGGTTGTTTTCTCTTACACCTTCATGGACAAAATTGTCCTTTCACAAGGATGGAGTGACTGGGGTGATCAAAAGCGCGACTTGAGAGTATATTATGGAGAATACAAGTGTAGTGGCCCTGGGGCTAATTTGACTGGAAGAGTACCATGGGCAAGGATGCTTACAGATGAAGAGGCCAAGCCCTTCACTGGAATTCAATTTATTGAAGGAGATTCTTGGCTCATCAGCCCCTGA 1050 0.4295 MAVKTRFQVIMMMITVFLLSSLCITLGTKLKVVGGSGPDLRLRDAESNKVRITVSQDGAGDFKTVTDAVNSIPQWNNRRFILYIAPGIYREKIMIPRTLPFVTFLGDASDPPTITGNDTASILGRNGKPIGTFQSATVAVDANYFLAINIKFENRAAHWIGRRGEQGVALRISGTKAAFYNCTFYGAQDTLYDHKGLHYFNNCLIQGSVDFIFGSGRSLYENCYLNSTTRKVASITAQKRTNSSMESGFSFKNCTVTGSGQVFLGRAWGDYSTVVFSYTFMDKIVLSQGWSDWGDQKRDLRVYYGEYKCSGPGANLTGRVPWARMLTDEEAKPFTGIQFIEGDSWLISP* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1205 349 PANTHER PECTINESTERASE 36 347 - -
Amo19g1205 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 347 - -
Amo19g1205 349 Pfam Pectinesterase 52 343 IPR000070 GO:0030599|GO:0042545
Amo19g1205 349 ProSitePatterns Pectinesterase signature 2. 205 214 IPR033131 -
Amo19g1205 349 Gene3D - 46 348 IPR012334 -
Amo19g1205 349 SUPERFAMILY Pectin lyase-like 50 346 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1205 Amo-Chr19 24085309 24089731 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1205 52 346 Carbohydrate Esterase AT5G47500 48.485 1.90e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1205 K01051 - qsu:112011696 521.546