Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1200 ATGGATGCCAAAGACATCTTGGGATTGCCTAAAAATTCGTTCCCTCCTCAGGAGAAGAAGTCTCGACCTCCCAAAGAGTCTCAGAGAAAACCCGATGGGATTTCCCGTGAGGTTTATGCGCTTACGGGTGGATTGGCACCACTTATGCCTGCTGTTGATTCTTCTCAATTGAAAAGAAGGCCTCCGCCAGACGAAAAGGTCGCTTGGCAGTGGCTTGGTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTATCATTGGGTCCGAGTTGTAAATGGTGTTCCACCAACTGGTGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATTACAAGATACACAGATGAGGAATATGAGAAGTATTTGACAGATCCTAGGTGGACCAAGGAAGAGACAGATCAGCTGTTTGACTTGTGCGAACAATTTGATCTCCGATTCATTGTCATAGCTGATAGGTTCCCATCATCTCGGACTCTAGAAGAATTGAAGGATCGATATTATAGCGTATCACGGGCTTTATTAATTGCTAGGAATCCATCTTCTGTGGATATTGCAGCACATCCTCTTCTTAAGGAACCATATAATATTTCACGTGATGTGGAGAGGAAACGAGCAATGTCCCTGGTCCTCTCTCAAACAAGGCAACAAGAGCAAAGAGATGAAGAGGTTCTTGCTGAAGCAAAAAGAATAGCTCAGTCACGCATACCTGCTAAGGTTTCTCAAGAATCTGAGATGGCTGTTGCTCCAAATGCTGGTGTAGAAGTTACTGAGAGGACTATCCCGGGTGAAACTGTGTCTCCACCTCCATCGAATGCGCAACATCCACTGATACCTGTGCCGCCTCCATTGTCAACCGAGAATGCATCAACTCTGGCTTCTCTTCACATTCTTCGTTTATATCTGAGGACCTATGCACTTGAGCAAATGTTGCAAGCTGCAAGCTCAACTGCTGGATTGCGAACTATCAAACGGGTTGAACAAACTTTGCAAGACCTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCCGTTTGTGCTGAACATCTTGAACTAAGGAAAGAAATACTAACTTTGTTGAATCTTCAAAAGCAGCTGCAATATAAGGAGGCTGAAGGTTTGCCTTTTCGTGAAGGGTCCTTCACTGAAACACCAGGAACACCAAAGGATAGAACATTTGTTCCTGACTCAAGTTTCGGAGTGGAGAGGACTGGCAAAAGGGACCAAAAGCGCAAGGCACCTGGAAGGCTTTCAGAAGCACCATCATCGCCAGCCCAGTCTAAAAGACCCAGAAAATTAAAGGCCTCTGATTTTTAG 1323 0.446 MDAKDILGLPKNSFPPQEKKSRPPKESQRKPDGISREVYALTGGLAPLMPAVDSSQLKRRPPPDEKVAWQWLGFTSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDITRYTDEEYEKYLTDPRWTKEETDQLFDLCEQFDLRFIVIADRFPSSRTLEELKDRYYSVSRALLIARNPSSVDIAAHPLLKEPYNISRDVERKRAMSLVLSQTRQQEQRDEEVLAEAKRIAQSRIPAKVSQESEMAVAPNAGVEVTERTIPGETVSPPPSNAQHPLIPVPPPLSTENASTLASLHILRLYLRTYALEQMLQAASSTAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGLPFREGSFTETPGTPKDRTFVPDSSFGVERTGKRDQKRKAPGRLSEAPSSPAQSKRPRKLKASDF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1200 440 MobiDBLite consensus disorder prediction 18 33 - -
Amo19g1200 440 MobiDBLite consensus disorder prediction 1 35 - -
Amo19g1200 440 MobiDBLite consensus disorder prediction 379 440 - -
Amo19g1200 440 Gene3D - 98 185 - -
Amo19g1200 440 SMART sant 125 174 IPR001005 -
Amo19g1200 440 MobiDBLite consensus disorder prediction 403 417 - -
Amo19g1200 440 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 439 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Amo19g1200 440 SUPERFAMILY Homeodomain-like 125 175 IPR009057 -
Amo19g1200 440 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Amo19g1200 440 CDD SANT_DMAP1_like 129 171 - -
Amo19g1200 440 PANTHER BNAA04G26950D PROTEIN 2 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1200 Amo-Chr19 23961345 23970035 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo19g1200 SANT_DAMP1_like 2.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1200 K11324 - gmx:100818926 679.863