Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1178 ATGTATATGGAGAAGGATAACATGGATTTGAAGAAGACTGAGGATGCTGTTGCTTTTGGATCCTCAAACGGTTATTATAATAATCCGTTGTTATTGTCGAGTGCGTTTGATTTCAGCTGTGAAGTGGAGAAAAGCTCGTTTATGGAGTTGCTGGGAGTGCAGGACTACTATAATAATAGTGGTGCTGTGCTTGATTTGCCACAGTTATCAAAAGCTACAGTTCTTCCTTTTACCACGGTTAACGCTTCTTGTGACGATACTGCTAAAGAGTGTTCTGAAGTGTTGAACCAGAAGCACCAACCTGCAACTCCGAATTCGTCTTCGATTTCGTCAGCGTCGAGTGAAGCTGTCAACGATGAACACAATAAAACTGTAGAACAAGATGATCATGATGATGATAGTGAAGAAGATGAAGGAGAAGAAGAGCAGCAGAAAAAGACTAAGAAAGAGTTGAAGGCAAAGAAGACAAAGCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACTAAAAGCGAGGTCGATCATCTGGAAGACGGTTACAGATGGAGAAAGTACGGTCAAAAGGCTGTCAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTAAAGAAGCGTGTGGAGCGGTCATTTACTGATCCAAGCGTTGTGGTAACTACCTATGAAGGCCAACACATACATCCAAGCCCAGTTATGCCTCGTTCAGCCATTGCCGGCGTTGGATCTCCGATGATGCCGCCGGCTGTCTCCACTGCCAACTTGGGTTCTCTCATGCCTGGAAACTACATGTCGCACTATCATCAGCATCGCCACCACCACCAACAACTACTAGTGAATACATTGTTCTCCTTGGGCATCCCTTACAACAATAGCAACAATATTGATAACTCTTCTTTTTCTCAAGACAATGGGCTTCTTCAAGATATTGTTCCTTCACACATGCTGAAAGAGAAGTAG 978 0.4376 MYMEKDNMDLKKTEDAVAFGSSNGYYNNPLLLSSAFDFSCEVEKSSFMELLGVQDYYNNSGAVLDLPQLSKATVLPFTTVNASCDDTAKECSEVLNQKHQPATPNSSSISSASSEAVNDEHNKTVEQDDHDDDSEEDEGEEEQQKKTKKELKAKKTKQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHIHPSPVMPRSAIAGVGSPMMPPAVSTANLGSLMPGNYMSHYHQHRHHHQQLLVNTLFSLGIPYNNSNNIDNSSFSQDNGLLQDIVPSHMLKEK* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1178 325 ProSiteProfiles WRKY domain profile. 172 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo19g1178 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 313 IPR044810 GO:0003700
Amo19g1178 325 PANTHER WRKY TRANSCRIPTION FACTOR 11 313 - -
Amo19g1178 325 Gene3D WRKY domain 160 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo19g1178 325 SUPERFAMILY WRKY DNA-binding domain 169 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo19g1178 325 PIRSF WRKY_txn_fact_IIc 3 325 IPR017396 GO:0003700
Amo19g1178 325 Pfam WRKY DNA -binding domain 178 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo19g1178 325 Coils Coil 134 161 - -
Amo19g1178 325 SMART WRKY_cls 177 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo19g1178 325 MobiDBLite consensus disorder prediction 97 118 - -
Amo19g1178 325 MobiDBLite consensus disorder prediction 97 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1178 Amo-Chr19 22841525 22844135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1178 101 325 WRKY Transcription Factor Family AT2G47260 55.187 2.34e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo19g1178 WRKY 7.7e-26 CL0274