Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1157 ATGGTTTCATTTTGCAGGATATTAGGAAGAGTTAATTATCTTATGGAGATTTCATCTGAATTGGGTATAATGGAGGATCCTAATAGCTTTCTCTGGCACTTAAGCTCTATTGATACTTGTGCTACTACCTTAGCTGTTTTTGGAGATAGCTTGCAAAAGAATAATCCATTATTCTGTAACTCAAACTTGATGAACTCCAAGATTTCCATGATGGAAACTACTACTTCACCTACTGCTACTATAATTGAAAGACCAGCAAAACAGCTTAGAAGTAACAACACTAGTAATTGGAGTAGTCACATTAACAAGACACCAGAGTCACACTTTGTTGGTTCTTGCTCAAATAATATTCTCTCCTTTGTTGACAACACAAATCATCATCATCATCAATTGGGGTTAGTAATGAAGCCTAAGGTTGAGATTATGAATAGTAGTAGTCCTAACAACATAGATACTCAAGGAACAACCTTGTTGGGGAATAATAATAATAATCATCATAATCATGAAAACTATCTATTCAAAGAATCATCATGCCATGAGGCTAAGAACTTTGGGCAACGTCCTAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGGAAGCGCAGAGAGAAGCTCAGCCAGCGCTTCATTGCTTTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGATAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAAAAGAAGAAGACCGTGGAATCAGTGGTAATGGTGAAGAAATCTCAGTTATGTAATGATGATGAAGACTCTTGCTCTTCAGAGACTGAGCCGCTACCCGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTAGTAAGAGTTCACTGCGAGAAGAAAAAGGGTGTTATAGAAAATACAATCATTGAAATTGAGAAACTCCATCTCAAAGTCATCAATAGCAGCGTCTTAACATTTGGGACTTTTGCCCTTGATATAACCATCATTGCTCAGATGGACATGGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTTAGCGTTTTCAACTTTCATGTGA 1107 0.3767 MVSFCRILGRVNYLMEISSELGIMEDPNSFLWHLSSIDTCATTLAVFGDSLQKNNPLFCNSNLMNSKISMMETTTSPTATIIERPAKQLRSNNTSNWSSHINKTPESHFVGSCSNNILSFVDNTNHHHHQLGLVMKPKVEIMNSSSPNNIDTQGTTLLGNNNNNHHNHENYLFKESSCHEAKNFGQRPKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVMVKKSQLCNDDEDSCSSETEPLPEIEARFCERNVLVRVHCEKKKGVIENTIIEIEKLHLKVINSSVLTFGTFALDITIIAQMDMEFSMTVKELVKNLRLAFSTFM* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1157 368 CDD bHLH_AtNAI1_like 197 268 - -
Amo19g1157 368 Gene3D - 192 266 IPR036638 GO:0046983
Amo19g1157 368 Pfam Helix-loop-helix DNA-binding domain 198 243 IPR011598 GO:0046983
Amo19g1157 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Amo19g1157 368 PANTHER BHLH TRANSCRIPTION FACTOR 19 367 - -
Amo19g1157 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 255 IPR036638 GO:0046983
Amo19g1157 368 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 19 367 - -
Amo19g1157 368 Coils Coil 232 259 - -
Amo19g1157 368 SMART finulus 199 248 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1157 Amo-Chr19 22037586 22040895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1157 196 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.889 1.13e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g1157 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1157 - - aip:107624263 705.671