Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1135 ATGGCTGGTGAAGGAGATAAAAAGAACGACTTCTATGCGGTTCTGGGATTGAACAAAGAGTGCACTGATTCAGAGCTAAGGAATGCATATAAGAAACTAGCACTGAAATGGCACCCTGATCGTTGTTCAGCGACGGGGAATTCAAAGTTCGTGGAAGAAGCTAAGAAGAAATTCCAAGCAATCCAGCAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTGGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGAATGAAATGGTAACAATGATGAGTCAAACAAACTCAAATGAAAATGGAGAAGAGAGCTTTGAGGAGCTGCAACAGCTGTTTGAAGATATGTTTCAAGATGATATTGGATCAGATAGAAGCACCACTTTTACTACTGCCGGTTGCTCCTCTTCGTCCGCGTGCATGGCTTATAGTGGAAACTCCAACTCGAATAAGCGCAATTCGGCTGAGATGAACTTTTTGAAGGCAGATAATTCCTTTGACTTTGATACCAGTTACCAGAACTTCTGCTTAGGGGTTAGTATATATAACAATACAATACTAAACATTTCAGGCTTCTCAGTTGAACTGAATTACTTGTGTTTGGAAAAATCATTTTTGGAAACAACAAATGTAGGCTTGTTTGGATTGTGA 678 0.41 MAGEGDKKNDFYAVLGLNKECTDSELRNAYKKLALKWHPDRCSATGNSKFVEEAKKKFQAIQQAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTNSNENGEESFEELQQLFEDMFQDDIGSDRSTTFTTAGCSSSSACMAYSGNSNSNKRNSAEMNFLKADNSFDFDTSYQNFCLGVSIYNNTILNISGFSVELNYLCLEKSFLETTNVGLFGL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1135 225 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Amo19g1135 225 PRINTS DnaJ domain signature 12 30 IPR001623 -
Amo19g1135 225 PRINTS DnaJ domain signature 30 45 IPR001623 -
Amo19g1135 225 PRINTS DnaJ domain signature 53 73 IPR001623 -
Amo19g1135 225 PRINTS DnaJ domain signature 73 92 IPR001623 -
Amo19g1135 225 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 190 - -
Amo19g1135 225 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
Amo19g1135 225 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Amo19g1135 225 CDD DnaJ 10 70 IPR001623 -
Amo19g1135 225 Gene3D DnaJ domain 6 138 IPR036869 -
Amo19g1135 225 PANTHER PUTATIVE, EXPRESSED-RELATED 1 190 - -
Amo19g1135 225 Pfam DnaJ domain 10 78 IPR001623 -
Amo19g1135 225 SMART dnaj_3 9 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1135 Amo-Chr19 21437738 21444847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1135 11 78 C2H2 Transcription Factor Family AT1G74250 44.928 2.60e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1135 - - lang:109338829 312.768