Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1133 ATGTTTGGTTTGTTTGGTCAGAAGCTGGGAAAAAGCTTCCATAAATTTGACGCTGCAAAGGATCCTGAGAATGAGCTTTATAAGAAGTCCTTAGAAGTTACTAATAAGTTGGAATCATTTTGGTTCACCATAGATGATGAAAATTGTTCTTCTAATGTTGCAGTCTTGATTAACATGTTATTAGCCATATATCAACTTCTGTGTCCCAGCATTGCACATGGAGATCCACAAAAATGGGCTTGGTCAGATGACTGGTGGTGGGGAATCCTCTACATCTTCAAAAACAAAGGGGTTGATATTCATGGGATTCTTCTTCTGAGAACTTTGATTGGAAAGATATTTGGCAGCATTGGATCAGTGGGAGGAGCCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTAGTGCTTGTATTGCTTCTTTGCTTGGACAAGTAAGAGTTTCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTAGAAGAGGTGGCGTGTCTTCTTCACTTCTGCTATTGTTGCTGTTGTAGTGCGAACTGCAATGGGATGGTGTAA 561 0.4082 MFGLFGQKLGKSFHKFDAAKDPENELYKKSLEVTNKLESFWFTIDDENCSSNVAVLINMLLAIYQLLCPSIAHGDPQKWAWSDDWWWGILYIFKNKGVDIHGILLLRTLIGKIFGSIGSVGGALALGKEGPLVHTSACIASLLGQVRVSAAFRAPVGGVLFALEEVACLLHFCYCCCCSANCNGMV* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1133 186 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 147 167 - -
Amo19g1133 186 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 96 145 - -
Amo19g1133 186 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 147 167 - -
Amo19g1133 186 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 96 145 - -
Amo19g1133 186 Pfam Voltage gated chloride channel 101 168 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo19g1133 186 Gene3D Clc chloride channel 34 147 - -
Amo19g1133 186 Gene3D Clc chloride channel 148 185 - -
Amo19g1133 186 SUPERFAMILY Clc chloride channel 96 173 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1133 Amo-Chr19 21425167 21429066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1133 96 168 Ion Channels AT5G26240 54.808 1.14e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1133 K05016 - adu:107484201 109.768