Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1116 ATGCAGACCAGCCGTGTCGTGGATGAAAAATTTATCCCAAAGGTGGGAATGATTTTCAAGACACTAGAAGAAGCTGGAAAGTTCTACAAACATTATTCTAAATTTGCCGATTTTTCTACCAAAATAAGGAACACGACTCAGGACGGAGACAAGATTAAAAATCAACTAATTGTATGCTCTAGAGAGGGGAGATGGAAATCAAAGATATCTCCAACTTTGAAGACAAACCCTTCAGTTGGGTTAAATTGTCCAGCCAGAATTTACGTACACATAATGAAGGATGTTGGTCTTTGGACAATTTTCAAAGTCGTTTTGAATCACTCACATCCTTGTTGTGCAGACCAGGCTGAGATGCTCAAACAACACATGGAGCTTAGCATGTTCGTGCGTCTTACCATCAAAACCCACGAGGAAGTCGGAATCAGACCGAGCAAAACTTTACCAATCATTTGTGGCAACAGCTGGCAGCCACCGTGA 477 0.4151 MQTSRVVDEKFIPKVGMIFKTLEEAGKFYKHYSKFADFSTKIRNTTQDGDKIKNQLIVCSREGRWKSKISPTLKTNPSVGLNCPARIYVHIMKDVGLWTIFKVVLNHSHPCCADQAEMLKQHMELSMFVRLTIKTHEEVGIRPSKTLPIICGNSWQPP* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1116 158 Pfam FAR1 DNA-binding domain 27 111 IPR004330 -
Amo19g1116 158 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 7 139 - -
Amo19g1116 158 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 7 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1116 Amo-Chr19 20900834 20901310 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g1116 FAR1 3.5e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1116 - - aip:107636690 261.151