Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1099 ATGATCTTTTCCAGCACTAACTCTATGATTTCTTCGGTACTAGATGGCGAGAGTACGCATCAAGAGGACTATCGGGGTAAACATCATTTGGTTGCAACCAACGAAATRAAATTCTRCTTGGATGCTTCCCCAAAACAAAAGCTTATTTCTAAGGAGTTCAAGAGAGGTACATTTTCTCCTTGCAGATGGGATGCAAATCAGGTTGTGGAGATGGAAGCTGATATATTGAAGTCTTTGAAGTTTGAATTGGGTGGTCCAACAGTAAAGACCTTTCTAAGAAGATTCTCTAAAGTTGCTCAAGAGAGCAAAGATACATCAGACTTGCAATTTGAGTTTCTCACTAGCTACCTCGCAGAGCTCAGTTTGTTGGATTATAATTGTGTAAAATTCTTGCCTTCTTTGGTGGCAGCATCTGTTGTATTTCTAGCAAGATTTATGCCAAGTCCAAAGACACATCCTTGGAATGCAGCACTTTATCAACTCACTAGATATAAACCTGCCGAATTAAAGGAATGTGCTCAAATATACATGATCTGTACCTCAGCAGGAGAGGTTTATGATTATCTGATTGATACTGCTGCTCGTGATCAAACAAGAGAGCGCACCAATGAGTTCTTGGAAAGTGTTAAAAGCCATGACCTAGCAAAAGCTGAGATTCTCAACATAATAAACATCAGGCCCACCAACATAGTCGAAATTCCATCACTAGAAGAGTTAGAARAGTTAGGAAGTAGGTCTTCTGGAGTGAGCAACAAAGAAGCATGA 765 0.3961 MIFSSTNSMISSVLDGESTHQEDYRGKHHLVATNEXKFXLDASPKQKLISKEFKRGTFSPCRWDANQVVEMEADILKSLKFELGGPTVKTFLRRFSKVAQESKDTSDLQFEFLTSYLAELSLLDYNCVKFLPSLVAASVVFLARFMPSPKTHPWNAALYQLTRYKPAELKECAQIYMICTSAGEVYDYLIDTAARDQTRERTNEFLESVKSHDLAKAEILNIINIRPTNIVEIPSLEELEXLGSRSSGVSNKEA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1099 254 CDD CYCLIN 86 177 IPR013763 -
Amo19g1099 254 Pfam RNA polymerase Rpb4 184 236 IPR005574 GO:0006352|GO:0030880
Amo19g1099 254 SUPERFAMILY HRDC-like 180 236 IPR010997 GO:0000166|GO:0044237
Amo19g1099 254 PANTHER CYCLINS 65 173 IPR039361 -
Amo19g1099 254 Pfam Cyclin, C-terminal domain 86 175 IPR004367 -
Amo19g1099 254 SMART cyclin_7 90 178 IPR013763 -
Amo19g1099 254 SUPERFAMILY Cyclin-like 86 177 IPR036915 -
Amo19g1099 254 SMART rpol4neu2 147 249 IPR006590 -
Amo19g1099 254 Gene3D - 74 201 - -
Amo19g1099 254 SMART Cyclin_C_2 86 214 IPR004367 -
Amo19g1099 254 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 65 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1099 Amo-Chr19 19960297 19963573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1099 66 175 Core Cell Cycle Gene Families AT1G47230 62.727 3.55e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1099 K06627 - gmx:100791691 187.193