Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1089 ATGAGGCACCACTTCAGCAGGATCCATGCATTTTCTTGTGGGAAAGCTTCAATAATCAGAGATAATGAAGAACATTCACTCCTAGGAGGCCCTGGATTCTCAAGAATAGTATATTGCAATGGTGCTGAGGGAAGTGGTAATTTAGAACTCAACTATGGTGATAATTATGTCAGCACAACTAAGTACACACTTGCAACTTTTCTACCCAAATCATTGTTTGAACAGTTTAGAAGGGTGGCCAATTTCTACTTCCTTGTTTGTGCTATATTGTCTTTCTTCCCTGTTTCGCCTTATTCGGCTGTTAGCAATGTTGTTCCTCTTGTGGTTGTGGTTTCTGCTACAATGGGGAAAGAGGCTGTTGAGGATTGGAGGAGGTTCAAGCAGGATGTTGAGATGAACAACAGAAGAGTTAAAGTTCACAATGGAGAAGGTGATTTTGATCATTCCAAATGGAGGGATTTGAGAGTTGGAGACATAGTAAAAGTGGAAAAAGATGAATTTTTTCCTGCTGATCTCATCTTACTTTCATCGAGCTATGACGAAGCGATTTGTTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTTAAACTGAAACAAGCACTGGAAGAAACTTCAAAGTTGCAAGAAGACTCAAACTTCCAAAATTTCAGTGCTACCATCAAATGTGAAGACCCGAATGCGAATTTGTACTCTTTTGTTGGAAGCCTGGAGCTTGATGATCAACAGTATCCTCTTTCACCTCAGCAGCTACTGCTTCGGGACTCAAAGCTCAGGAACACAGATTTTATCTATGGTGTGGTTATTTTCACAGGTCATGATACAAAAGTTATGCAGAATTCGACAGATCCTCCTTCCAAGAGAAGCAATGTTGAGAGAAGAATGGATAAGATAATCTACTTCTTGTTCCTTATCTTGTTTTTGATTTCTTTTATTGGCTCAATTTTCTTTGGGATTGCAACAAGGGAAGACTTAGAAAATGGAAGAATGAAGAGATGGTACCTTAGACCCGATGATACTTCGATCTACTATGATCCAAAGAAAGCACCAATTGGAGCAACTCTGCATTTCTTGACTGCACTAATGCTTTATAGTTACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTCAAAGTTCTTCAAAGCATTTTCATCAACCAGGACTTGAACATGTATTATGAGGAAACTGACCAGCCAGCACATGCTCGAACCTCGAATTTGAATGAAGAACTAGGCCAAGTCGATACGATACTTTCGGATAAAACAGGAACTTTGACCTGCAATTCTATGGAGTTTATCAAGTGTTCTATCGCCGGGGTCGCCTATGGACAGGGTGTTACTGAAGTGGAGAGAGCTATGGCTAGGAGAAAAGGTCTAGAGTTGACTGAAGATGACAATGTTGCAAATTCTGAAGCAAAATCATCAATTAAAGGTTTCAACTTTATGGATGAAAGGATCATGAATGGAAATTGGTATAAAGAACCTCATGCCTATGTAATACAGAAATTCTTGCGCTTGTTGGCTGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACCGGTAAAGTTTCGTATGAAGCCGAGTCACCGGATGAGGCAGCTTTTGTTATAGCTGCTAGAGAACTTGGATTTGAGTTTTATGAAAGGACACAGTCAAGTATTATGCTGCGCGAGCTCAATTCCGTATCAGGCAAGATTACTGAAAGGGACTACCAGCTTTTGAATATATTGGAGTTTACTAGTGCAAGAAAGAGGATGTCGGTCATAGTGAGAGATGAGGAGGGTAAACTACTACTACTTAGCAAAGGCGCTGACAGTGTCATGTTCGAACGACTTGCAAAGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTAATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTCGATGAGGATGAATACAATCAATTTAATAAAGAATTCATGGAAGCCAAGAACTTGGTGAGTGCGGATCGAGAGCAGGTAATAGAGGAAATATCCAAAAAGATTGAGAAGGATTTGATTCTTCTTGGTGCCACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGCATTAAGCTATGGGTTTTAACTGGTGACAAAATGGAGACAGCAATCAACATCGGGTATGCTTGTAGTTTACTCAGACAAGGAATGAAGCAAATTATAATTAGCTCGGACACTCCAGAGGCAAAATCGTTGGAGAAAGCGGAGGACAAATCTGCTGCGGATGCGGCAATCAAGGAAATCGTTCTTCGACAATTAAGGGAAGGAGAGGCATTACTTTCTTCATCTAATGAAAACTCCGAGGCCATTGCTCTGATCATCGACGGGAAGTCACTCACACACGCTCTAGATGATGATGTTATGGACTTGTTTCTGGAACTCGCCATCGGCTGTGCATCGGTTATATGCTGCCGGTCATCTCCTAAACAGAAAGCACTTGTAACTAGACTAGTTAAGACTAAAACTGGTAGTACAACTCTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATTGGGATCGGTATCAGTGGTGTCGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATTGCACAGTTCCGGTTTCTAGAGCGCTTACTTCTAGTGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTTTTTTACAAGAACATTGCCTTTGGCCTCACTCTTTTCTTCTATGAGATCTATGCCTCGTTCTCGGGTGAAGCTGCATATAATGATTGGTTCCTGTCATTATATAATGTGTTCTTCACTTCTCTTCCTGTTATTGCCTTGGGAGTATTTGATCAAGATGTCTCTGCCAAATTATGCCTCAAGTTCCCACTGCTATATCAAGAAGGTGTACAAAACGTCCTGTTTAGCTGGAAACGAATCCTCGGCTGGGCCTTCAACGGAGTCTTAAACGCTACACTGATATTCTTCTTCTGCGTCAAGGCAATCGAGTATCAGGCATTCCGAAAAGGTGGTGAAGTCGCCGGGCTCCAAGAACTTGGAGCCACAATGTACACTTGTGTAGTTTGGGTTGTTAATTGCCAAATGGCATTATCCATAAATTACTTCACCTACATTCAACACATTTTCATTTGGGGTGGCATTCTTTTGTGGTATTTATTCCTCTTAGCATATGGTGCCATGGATCCTACTCTTTCAACCACTGCATATAAGGTCTTTGTTGAGGCTTGTGCTCCGGCACCATCTTACTGGCTCATCACTCTTCTTGTTCTCGTCACTTCGCTCCTTCCTTATTTCATCTACGCATCGATCCAAATGCGGTTCTACCCTATGTTCCATCAGATGATACAGTGGATAAGGAGTGATGGCCAAGCAACTGACCCCGAATATGTTAATGTTGTCCGGCAGAGGTCGATAAGACACACGACAGTTGGCTTCACTGCCCGTTTCCAGGCGTCCCAACGGCTTGAAGCCTCGAAACGTCTTCAAGTCTGA 3561 0.417 MRHHFSRIHAFSCGKASIIRDNEEHSLLGGPGFSRIVYCNGAEGSGNLELNYGDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVCAILSFFPVSPYSAVSNVVPLVVVVSATMGKEAVEDWRRFKQDVEMNNRRVKVHNGEGDFDHSKWRDLRVGDIVKVEKDEFFPADLILLSSSYDEAICYVETMNLDGETNLKLKQALEETSKLQEDSNFQNFSATIKCEDPNANLYSFVGSLELDDQQYPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTDPPSKRSNVERRMDKIIYFLFLILFLISFIGSIFFGIATREDLENGRMKRWYLRPDDTSIYYDPKKAPIGATLHFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDLNMYYEETDQPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGQGVTEVERAMARRKGLELTEDDNVANSEAKSSIKGFNFMDERIMNGNWYKEPHAYVIQKFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTQSSIMLRELNSVSGKITERDYQLLNILEFTSARKRMSVIVRDEEGKLLLLSKGADSVMFERLAKNGREFEEKTKQHINEYADAGLRTLILAYRELDEDEYNQFNKEFMEAKNLVSADREQVIEEISKKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGYACSLLRQGMKQIIISSDTPEAKSLEKAEDKSAADAAIKEIVLRQLREGEALLSSSNENSEAIALIIDGKSLTHALDDDVMDLFLELAIGCASVICCRSSPKQKALVTRLVKTKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGLTLFFYEIYASFSGEAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSAKLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLNATLIFFFCVKAIEYQAFRKGGEVAGLQELGATMYTCVVWVVNCQMALSINYFTYIQHIFIWGGILLWYLFLLAYGAMDPTLSTTAYKVFVEACAPAPSYWLITLLVLVTSLLPYFIYASIQMRFYPMFHQMIQWIRSDGQATDPEYVNVVRQRSIRHTTVGFTARFQASQRLEASKRLQV* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1089 1186 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 52 1139 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Amo19g1089 1186 CDD P-type_ATPase_APLT_Dnf-like 54 1014 - -
Amo19g1089 1186 Gene3D - 686 894 IPR023214 -
Amo19g1089 1186 SFLD Haloacid Dehalogenase 403 905 - -
Amo19g1089 1186 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 820 937 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo19g1089 1186 Pfam Phospholipid-translocating ATPase N-terminal 38 102 IPR032631 -
Amo19g1089 1186 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1132 IPR023298 -
Amo19g1089 1186 SUPERFAMILY Calcium ATPase, transduction domain A 143 281 IPR008250 -
Amo19g1089 1186 Gene3D - 109 283 - -
Amo19g1089 1186 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 1178 - -
Amo19g1089 1186 Pfam Cation transport ATPase (P-type) 513 616 - -
Amo19g1089 1186 Gene3D - 540 668 IPR023299 GO:0000166
Amo19g1089 1186 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 476 692 IPR023299 GO:0000166
Amo19g1089 1186 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1132 IPR032630 -
Amo19g1089 1186 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Amo19g1089 1186 PRINTS P-type cation-transporting ATPase superfamily signature 740 750 - -
Amo19g1089 1186 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Amo19g1089 1186 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Amo19g1089 1186 SFLD p-type atpase 403 905 IPR044492 -
Amo19g1089 1186 SUPERFAMILY HAD-like 416 909 IPR036412 -
Amo19g1089 1186 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 2 1178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1089 Amo-Chr19 19771030 19777637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1089 4 1186 Primary Pumps ATPases AT3G25610 70.345 0.0 1788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1089 K01530 K14802 gmx:100797039 2003.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0600 19 9315075 9322124 Amo19g1089 19 19771030 19777637 PCT
Amo19g1089 19 19771030 19777637 Amo19g0600 19 9315075 9322124 PCT