Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1071 ATGGCCGTAGCTCCGGCAATAACCGGCCTCCGGCCAACTCTCCTCTTCTACTACATGTTCACCACCGTAGTCATCCACGTCGCAGTGACATTTTCCATGTCAGAAGCTGAGGCTTTGCTGACCCTCAAAAACTCATTCTCCAATGCCCAAGCATTGGGTAGTTGGGTGGCTAACTCTGTTCCGTGCTCTAAAGACCATCAATGGGATGGTGTTGTCTGCGTTAACGGATTAGTCTCAGGGCTTCGTCTTGGAGGAATGGGACTATTGGGTGAAATAGACGTTGATACATTGCTCGAACTCAAGAATCTCAGAACTATTAGCCTTGTGAACAACTCTTTCTCAGGTTCAATTCCGCAGCTCAACAGAATAGGATTCTTGAAGGCCATGTATTTGTCAGGAAACAAATTCTCTGGGAATATTCCCACAGATTACTTTCAGAGAATGAGGTCTCTGAAGAAATTGTGGCTTTCTAACAACGAATTCACAGGTCAAATCCCAGCCTCATTAGCCGAGATCCCTCAGCTTGTTGAGTTGCATCTGGAGAATAACCAGTTTAGTGGAAATATACCAAATCTTGCGAATCCTTCATTGGTGGACCTCAATTTGTCATATAACAAATTGGAAGGTGAAGTTCCACAGGCTCTTTCGAAGTTCGATGAGAGTTCTTTCGCAGGAAATGATGGTATTTGTGGCAAAAAGATTGGGAAGCCATGTGAGAAGCTTCCAGAAGAGACGGTTATTCCCCTGCCTGTGACGAATGGGAGCTGGAACAACAAACTGCAGATTGCTGGCTTTGCCTTAACGAGCTTGTTGCTTGTGGCGCTTATTATTTTCTTCATTGTCCGGTCGAAGMGGAATAAGGACAATGAGGAGTTTGGCAGGTTTGGAAACRRCGGTAGTATTGCYGGAGAGTCCGTGGAGGTTCAGGTGAGTCARCCGGTGAAAAGAGAAGGRGTACCARCTGTGACGACGGTAGTTAGCAGAAAAGGATCAAGTAAGAGGGGATCTTGTCATGGTGGAAGCAAGGGGGTAGGGGAGCTTGTGGTTGTGAATGATGAGAAGGGGGTTTTCGGGTTGTCGGATTTGATGAAGGCGGCGGCAGAAGTGCTAGGAAATGGTGGGCTTGGGTCTTGTTATAAGGCTGTGATGTCTAATGGGGTGGCGGTGGTGGTGAAGAGGACAAGGGAGATGAATGCGTTGGAGAAAAAAAGTTTTGATGCTGAGATTTGTAGGCTTGGGAGGCTAAAACATTTGAATATCTTGACCCCTTTGGCTTACCATTTCAGAAAGGATGAGAAACTAATTATGTCCGAGTATGTCCCCGGGAGCAGTCTATTGTTTTTGCTTCATGGTGACAGGGGACCATCTCATGCTGAATTGGATTGGCCAGCACGTTTAAAGATTGTAAGGGGAATTGCTGAAGGGATGCGTTATCTTCACACAGAACTAGCTTCTTCTAATGTACCCCATGGCAATCTCAAGTCTAGCAATGTTTTATTAGGACCAGATTACCAGCCAATGCTTGTAGATTATGGATTTAGCCAAATGGTTAATCCTTCCACTGCAACACAAGCTCTTTTTGCTTATAAGGCTCCAGAAGCCGCACGAGGCCAAGTTTCGCATAAAAGTGACGTGTATTGTCTTGGAGTTGTTATACTCGAGATCCTCACCGGAAAATTCCCTTCTCAATATCTTAGTAACAAGAAGGGCGGAACCGACGTAGTCGAATGGGTTACGTCAGCAATTTCTGAGGGAAGGGAGTCAGAGTTGCTTGATCCTCAGATTGCAAACAACAAAATTTCAATAGGCCAAATGGTCCAACTTCTTCATGTAGGTGCTGCTTGCACAGAAAGCAACCCCGAGCAACGAATCGACATCAAGGAGGCCATAAGAAGAATAGAAGAGGTAGCAAGGCAGAGTGGAACAACAGAGGTTGTAACATCTCTCAAAGATAGCTTTGTAGATTCCAATATGTCACGGAATCAAGGACTAGGTGAGGAATATCAGAAGAGACATATGGATGGATCAGAAAGCTTTGGAAGCCAAGACTATTATGAATTTGGCTCCTTCTCCTCATATAATACAACAGCCTAA 2094 0.4503 MAVAPAITGLRPTLLFYYMFTTVVIHVAVTFSMSEAEALLTLKNSFSNAQALGSWVANSVPCSKDHQWDGVVCVNGLVSGLRLGGMGLLGEIDVDTLLELKNLRTISLVNNSFSGSIPQLNRIGFLKAMYLSGNKFSGNIPTDYFQRMRSLKKLWLSNNEFTGQIPASLAEIPQLVELHLENNQFSGNIPNLANPSLVDLNLSYNKLEGEVPQALSKFDESSFAGNDGICGKKIGKPCEKLPEETVIPLPVTNGSWNNKLQIAGFALTSLLLVALIIFFIVRSKRNKDNEEFGRFGNXGSIAGESVEVQVSQPVKREGVPXVTTVVSRKGSSKRGSCHGGSKGVGELVVVNDEKGVFGLSDLMKAAAEVLGNGGLGSCYKAVMSNGVAVVVKRTREMNALEKKSFDAEICRLGRLKHLNILTPLAYHFRKDEKLIMSEYVPGSSLLFLLHGDRGPSHAELDWPARLKIVRGIAEGMRYLHTELASSNVPHGNLKSSNVLLGPDYQPMLVDYGFSQMVNPSTATQALFAYKAPEAARGQVSHKSDVYCLGVVILEILTGKFPSQYLSNKKGGTDVVEWVTSAISEGRESELLDPQIANNKISIGQMVQLLHVGAACTESNPEQRIDIKEAIRRIEEVARQSGTTEVVTSLKDSFVDSNMSRNQGLGEEYQKRHMDGSESFGSQDYYEFGSFSSYNTTA* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1071 697 Gene3D Transferase(Phosphotransferase) domain 1 441 657 - -
Amo19g1071 697 SUPERFAMILY L domain-like 33 217 - -
Amo19g1071 697 ProSiteProfiles Protein kinase domain profile. 364 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1071 697 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Amo19g1071 697 Gene3D Phosphorylase Kinase; domain 1 357 439 - -
Amo19g1071 697 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 16 641 - -
Amo19g1071 697 Pfam Protein kinase domain 368 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1071 697 SUPERFAMILY Protein kinase-like (PK-like) 368 633 IPR011009 -
Amo19g1071 697 Gene3D Ribonuclease Inhibitor 32 193 IPR032675 -
Amo19g1071 697 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Amo19g1071 697 Gene3D Ribonuclease Inhibitor 194 241 IPR032675 -
Amo19g1071 697 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1071 Amo-Chr19 19296460 19299196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1071 14 637 Receptor kinase-like Gene Family AT3G42880 47.492 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo19g1071 Pkinase 7.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1071 - - var:108346415 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1071 19 19296460 19299196 Amo19g1071 19 19296460 19299196 ECH