Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1043 ATGGTAGATTTCAGAAAATCAGCATCAGCTAAGCCTAAAAATAGTGGTGGCCCTACGACTGTGATCGCCGTGACCAGTGGCCGGAAAAGCCAATACGCCATCCAGTGGGCCGTAGAACATATTCTGAAGAAGAATTCCTCTTGCATTCTCATTCACGTTCAGACCAATCGTTTGTACCATCAGAATGGTGTTGGACCTAGTCATTGTCGTCCACCAACTGAAGAAGAATGGCAACGGATTTTTCTCCCTTTCAGAGGGCTTTGTGCTCGAAAAGGGATTGTAGCGACAGAGTTGGTGTTACAAGGCGCTAACGTTACCAGTGCACTTACTCAATACGTAAATGAAAACTATATTAGTAGCGTCATTGTTGGTGCTTCCCAATGGAATTCTTTTATAAGGAAATTTAAAAATACGGATGTGGCAGCTAGCTTAGCCAAGTCTTTGCCAGATTTTTGCTCAATATATGTTATATCGAAAGGAAAAGTCCAAACTATCCGTCCAGCAGGTCCTGCTCAAAATGGTAAATTCACAAAAGCAGCAACAGTAAAAGGGGTAGCAACGCCAGATTATTTTTTTAACAATTCACCTCAACATATAAACAGCTTGGTCAAAGAGGCTACATTATCAATGACACCAAGTAATTTTTCACCAATAGAACAAAGTCCAACAATATCCTTTGGAGGCTCTTCACCACAAACCGACAGTGATCTTGAATTCGCAAAGTCACAAATCACTTCGTCAAAATCCAAAAAAAAAATGGAGGAAGAATTAATGAAATTAAAACTTGAACTAAAGAAAACAAATGAGCAATATGGATTGTTCTATAAAGAAGTCGACTCTGCGCATAAGGGAGTGGATGAGTATGAAAAGGCTAAGCTTTCAAGGCAGAAAACAGTGCATGCTATGGAAAACGAGGAAAATCAAGGAGCTTCAAGTTCTGCCTACATTTATAAAAACATCGTTCCATACAGAAGATACAACATTAAAGAAATAGAAATTGCAACTAATTACTTTGATATTGATCTCAAAATTGGAGAAGGTGGTTATGGACCAGTTTTTAAAGGAGTAATTGACAACACTGATGTYGCCATCAAGGCTGTGAGGCCAGATATAAGCCATGGGGAAAGACAATTTAACCAAGAGGTTCAAGTTTTGAGCACCATAACACATCCAAACATGGTACTACTCATAGGTGCATGCCCAGAATTCGGATGTCTTGTGTATGAATACATGGACTATGGAAGTTTGGAAGATCGTTTATTCAGAAAAGGAAACACTCCTCCAATCCCATGGAAAATCCGTTTCAGAATAGCATCGGAAATCGCCACCGCCCTTCTCTACCTTCACCAACTAAAACCAGAGCCACTAGTCCACCGTGACCTCAAGCCAGCAAATATCCTCTTAGACAGAACCTATTTAAGCAAGATCGGCGACGTCGGTCTTGCGAGGCTCGTTCCGCCTTCGGTCGCTGACAAAACTACCCAGTACCGGCTGACGAAAGCCGCCGGCACGTTCTGTTATATCGACCCGGAGTATCAACAGACAGGGTTGTTGGGTGTGAAATCGGACATATATTCTTTTGGTGTGATGCTGCTTCAGATTATAACTGCAAAGCCTCCAATGGGGTTGGCTCATTTGGTTCAGAGTGCTATTGATGCTGGAAGCTTTGAACAAGTTCTTGATCCTAGTTTGAATGATTGGCCTGTTGAAGATGCTTTGTCTTGTGCTAAGTTGGCATTGAAGTGTTGTGAGATGAGAAAACGAGATAGACCCAGTCTTGCTACTGTGATTTTACCCGAGTTGAATAGGCTCAGAGATTTGAGATAG 1827 0.416 MVDFRKSASAKPKNSGGPTTVIAVTSGRKSQYAIQWAVEHILKKNSSCILIHVQTNRLYHQNGVGPSHCRPPTEEEWQRIFLPFRGLCARKGIVATELVLQGANVTSALTQYVNENYISSVIVGASQWNSFIRKFKNTDVAASLAKSLPDFCSIYVISKGKVQTIRPAGPAQNGKFTKAATVKGVATPDYFFNNSPQHINSLVKEATLSMTPSNFSPIEQSPTISFGGSSPQTDSDLEFAKSQITSSKSKKKMEEELMKLKLELKKTNEQYGLFYKEVDSAHKGVDEYEKAKLSRQKTVHAMENEENQGASSSAYIYKNIVPYRRYNIKEIEIATNYFDIDLKIGEGGYGPVFKGVIDNTDVAIKAVRPDISHGERQFNQEVQVLSTITHPNMVLLIGACPEFGCLVYEYMDYGSLEDRLFRKGNTPPIPWKIRFRIASEIATALLYLHQLKPEPLVHRDLKPANILLDRTYLSKIGDVGLARLVPPSVADKTTQYRLTKAAGTFCYIDPEYQQTGLLGVKSDIYSFGVMLLQIITAKPPMGLAHLVQSAIDAGSFEQVLDPSLNDWPVEDALSCAKLALKCCEMRKRDRPSLATVILPELNRLRDLR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1043 608 Pfam Protein kinase domain 341 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1043 608 Gene3D Phosphorylase Kinase; domain 1 317 410 - -
Amo19g1043 608 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g1043 608 SMART serkin_6 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1043 608 Gene3D Transferase(Phosphotransferase) domain 1 411 607 - -
Amo19g1043 608 CDD STK_N 19 160 - -
Amo19g1043 608 Coils Coil 250 270 - -
Amo19g1043 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Amo19g1043 608 ProSiteProfiles Protein kinase domain profile. 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1043 608 PANTHER OS02G0152300 PROTEIN 19 306 - -
Amo19g1043 608 PANTHER OS02G0152300 PROTEIN 297 607 - -
Amo19g1043 608 Gene3D HUPs 19 157 IPR014729 -
Amo19g1043 608 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 156 - -
Amo19g1043 608 SUPERFAMILY Protein kinase-like (PK-like) 313 597 IPR011009 -
Amo19g1043 608 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 19 306 - -
Amo19g1043 608 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 297 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1043 Amo-Chr19 18161462 18167347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1043 20 607 Receptor kinase-like Gene Family AT1G17540 43.215 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo19g1043 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1043 - - ahf:112778050 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1043 19 18161462 18167347 Amo19g1043 19 18161462 18167347 ECH
Amo19g1043 19 18161462 18167347 Amo09g0548 09 7300482 7305750 hybridization